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I love the smell of assembler in the morning! (Well, it was morning when I started).
This change reads the GPIO state and sets the enable 3v3 as early as possible during the boot process. It shaves a couple of milliseconds off when the buttons are read and the power is enabled, because it's done before the external crystal oscillator is started and stable.
Because the initialization is now done in assembler, I've removed the WakeUpInit class the cpp file, so now there are just trivial functions to read the saved state.
I've also removed the access to pressed_to_wake from the Badger2040 object, as it isn't something apps should be using, and removed clear_pressed_to_wake again as it is unnecessary given the launcher waits for all buttons to be released anyway.