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Install GRAFIMO via Bioconda (Linux users only)

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ManuelTgn edited this page Dec 10, 2020 · 2 revisions

To install GRAFIMO via Bioconda the user should first have the conda package installed. If the user have an Anaconda Python installation, conda is already available, otherwise it can be installed with Miniconda package. For further details (https://bioconda.github.io/user/install.html).

Once conda is available, to install GRAFIMO type:

conda install grafimo

To update GRAFIMO:

conda update grafimo

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Required softwares and dependencies

Install GRAFIMO via pip

Install GRAFIMO via source code

Install GRAFIMO via Bioconda

Use GRAFIMO via Docker

Building genome variation graphs (VGs) with GRAFIMO

Single whole genome variation graph or a VG for each chromosome?

Which file format for motifs?

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