[WIP] Gensim docker container

docker/Dockerfile

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+FROM ubuntu:16.04
+
+MAINTAINER Daniel Baptista Dias <danielbpdias@gmail.com>
+
+ENV GENSIM_REPOSITORY https://github.com/parulsethi/gensim/archive
+ENV GENSIM_BRANCH gensim_docker
+
+# Installs python, pip and setup tools (with fixed versions)
+RUN apt-get update \
+    && apt-get install -y \
+    ant=1.9.6-1ubuntu1 \
+    cmake=3.5.1-1ubuntu3 \
+    default-jdk=2:1.8-56ubuntu2 \
+    g++=4:5.3.1-1ubuntu1 \
+    git=1:2.7.4-0ubuntu1 \
+    libboost-all-dev=1.58.0.1ubuntu1 \
+    libgsl-dev=2.1+dfsg-2 \
+    mercurial=3.7.3-1ubuntu1 \
+    python3=3.5.1-3 \
+    python3-pip=8.1.1-2ubuntu0.4 \
+    python3-setuptools=20.7.0-1 \
+    python \
+    python-pip \
+    python-setuptools \
+    unzip=6.0-20ubuntu1 \
+    wget=1.17.1-1ubuntu1.1 \
+    subversion \
+    locales \
+    libopenblas-dev \
+    libboost-program-options-dev \
+    zlib1g-dev
+
+# Setup python language
+RUN locale-gen en_US.UTF-8
+ENV LANG en_US.UTF-8
+ENV LC_CTYPE en_US.UTF-8
+ENV LC_ALL en_US.UTF-8
+
+# Upgrade pip
+RUN pip2 install --upgrade pip
+RUN pip3 install --upgrade pip
+
+# Install dependencies
+RUN pip2 install \
+    cython==0.25.2 \
+    jupyter==1.0.0 \
+    matplotlib==2.0.0 \
+    nltk==3.2.2 \
+    pandas==0.19.2 \
+    git+https://github.com/mila-udem/blocks.git@stable \
+    -r https://raw.githubusercontent.com/mila-udem/blocks/stable/requirements.txt
+
+RUN pip3 install \
+    cython==0.25.2 \
+    jupyter==1.0.0 \
+    matplotlib==2.0.0 \
+    nltk==3.2.2 \
+    pandas==0.19.2 \
+    git+https://github.com/mila-udem/blocks.git@stable \
+    -r https://raw.githubusercontent.com/mila-udem/blocks/stable/requirements.txt
+
+# avoid using old numpy version installed by blocks requirements
+RUN pip2 install -U numpy
+RUN pip3 install -U numpy
+
+# Create gensim directory and dependencies directory
+RUN mkdir /gensim \
+    && mkdir /gensim/gensim_dependencies
+
+# Download gensim from Github
+RUN mkdir /gensim/download \
+    && cd /gensim/download \
+    && wget --quiet $GENSIM_REPOSITORY/$GENSIM_BRANCH.zip \
+    && unzip $GENSIM_BRANCH.zip \
+    && mv ./gensim-$GENSIM_BRANCH/* /gensim \
+    && rm -rf /gensim/download \
+    && cd /gensim \
+    && pip2 install .[test] \
+    && python2 setup.py install \
+    && pip3 install .[test] \
+    && python3 setup.py install
+
+# Set ENV variables for wrappers
+ENV FT_HOME gensim_dependencies/fastText
+ENV WR_HOME gensim_dependencies/wordrank
+ENV MALLET_HOME gensim_dependencies/mallet
+ENV DTM_PATH gensim_dependencies/dtm/dtm/main
+ENV VOWPAL_WABBIT_PATH gensim_dependencies/vowpal_wabbit/vowpalwabbit/vw
+
+# Install custom dependencies
+
+# Install fastText
+RUN cd /gensim/gensim_dependencies \
+    && git clone https://github.com/facebookresearch/fastText.git \
+    && cd /gensim/gensim_dependencies/fastText \
+    && make
+
+# Install WordRank
+RUN cd /gensim/gensim_dependencies \
+    && git clone https://bitbucket.org/shihaoji/wordrank \
+    && cp /gensim/docker/wordrank_install.sh /gensim/gensim_dependencies/wordrank/install.sh \
+    && cd /gensim/gensim_dependencies/wordrank \
+    && sh ./install.sh
+
+# Install MorphologicalPriorsForWordEmbeddings
+RUN cd /gensim/gensim_dependencies \
+    && git clone https://github.com/rguthrie3/MorphologicalPriorsForWordEmbeddings.git
+
+# Install DTM
+RUN cd /gensim/gensim_dependencies \
+    && git clone https://github.com/blei-lab/dtm.git \
+    && cd /gensim/gensim_dependencies/dtm/dtm \
+    && make
+
+# Install Mallet
+RUN mkdir /gensim/gensim_dependencies/mallet \
+    && mkdir /gensim/gensim_dependencies/download \
+    && cd /gensim/gensim_dependencies/download \
+    && wget --quiet http://mallet.cs.umass.edu/dist/mallet-2.0.8.zip \
+    && unzip mallet-2.0.8.zip \
+    && mv ./mallet-2.0.8/* /gensim/gensim_dependencies/mallet \
+    && rm -rf /gensim/gensim_dependencies/download \
+    && cd /gensim/gensim_dependencies/mallet \
+    && ant
+
+# Install Vowpal wabbit
+RUN cd /gensim/gensim_dependencies \
+    && git clone https://github.com/JohnLangford/vowpal_wabbit.git \
+    && cd /gensim/gensim_dependencies/vowpal_wabbit \
+    && make \
+    && make install
+
+# Start gensim
+
+# Run check script
+RUN python2 /gensim/docker/check_fast_version.py
+RUN python3 /gensim/docker/check_fast_version.py
+
+# Add running permission to startup script
+RUN chmod +x /gensim/docker/start_jupyter_notebook.sh
+
+# Define the starting command for this container and expose its running port
+CMD sh -c '/gensim/docker/start_jupyter_notebook.sh 9000'
+EXPOSE 9000

docker/README.md

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+# Build gensim image
+
+In docker directory run the following command to build the image locally:
+
+```
+docker build -t gensim .
+````
+
+After that, you will need to search the gensim_image_id and tag the image using:
+
+```
+# check the image
+docker image ls
+
+# generage the tag
+docker tag [gensim_image_id] [my_user]/gensim:latest
+```
+
+Run the interactive bash mode:
+
+```
+docker run -it [my_user]/gensim /bin/bash
+```
+
+Run gensim tests in the interactive bash mode:
+
+```
+# run tests with desired python version
+cd gensim
+python2 setup.py test
+```
+
+To push the image to docker hub:
+
+```
+# login to docker hub
+docker login
+
+# push image to docker hub
+docker push [my_user]/gensim
+```
+
+# Run gensim image from anywhere
+
+Just execute:
+
+```
+docker run -p 9000:9000 [my_user]/gensim
+```

docker/check_fast_version.py

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+import sys
+
+try:
+    from gensim.models.word2vec_inner import FAST_VERSION
+
+    print('FAST_VERSION ok ! Retrieved with value ', FAST_VERSION)
+    sys.exit()
+except ImportError:
+    print('Failed... fall back to plain numpy (20-80x slower training than the above)')
+    sys.exit(-1)

docker/docker-compose.yml

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+version: '2'
+
+services:
+  gensim:
+    build: .
+    ports:
+      - 9000:9000

docker/start_jupyter_notebook.sh

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+#!/bin/bash
+
+PORT=$1
+NOTEBOOK_DIR=/gensim/docs/notebooks
+DEFAULT_URL=/notebooks/gensim%20Quick%20Start.ipynb
+
+jupyter notebook --no-browser --ip=* --port=$PORT --allow-root --notebook-dir=$NOTEBOOK_DIR --NotebookApp.token=\"\" --NotebookApp.default_url=$DEFAULT_URL

docker/wordrank_install.sh

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+#!/bin/bash
+
+printf "1. clean up workspace\n"
+./clean.sh
+
+printf "\n2. install glove to construct cooccurrence matrix\n"
+wget http://nlp.stanford.edu/software/GloVe-1.0.tar.gz # if failed, check http://nlp.stanford.edu/projects/glove/ for the original version
+tar -xvzf GloVe-1.0.tar.gz; rm GloVe-1.0.tar.gz
+patch -p0 -i glove.patch
+cd glove; make clean all; cd ..
+
+printf "\n3. install hyperwords for evaluation\n"
+hg clone -r 56 https://bitbucket.org/omerlevy/hyperwords
+patch -p0 -i hyperwords.patch
+
+printf "\n4. build wordrank\n"
+export CC=gcc CXX=g++      # uncomment this line if you don't have an Intel compiler, but with gcc all #pragma simd are ignored as of now
+cmake .
+make clean all