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* turned off pressure force * hard-coded BLD * turned off advect_tracer * set NTR = 2
This commit adds a linear transition from full LBD at k=k_min to zero LBD at k=k_max. This is applied to both methods currently available in the LBD module. Another modification is the fact that both methods no longer compute average values at k_min (done previously via average_value_ppoly). Instead, the full layer thicknesses are now used.
This patch adds the option to apply a linear decay of the fluxes at the base of hbl. This had been already implemented but since it breaks the unit tests, which were designed to work without this option, adding this option will avoid breaking the tests.
When using the option to apply neutral diffusion only below the surface boundary layer we were using (1.-zeta). This is wrong. It should be just (zeta).
Valid options are: * PARAM - use the vector-parameter LBD_DZ_TOP * UNIFORM[:N] - uniformly distributed * FILE:string - read from a file
For each tracer point: * tracers at (I,j), (I+1,j), (i,J) and (i,J+1) are remapped to a defined zgrid; * Apply LBD, uflux and vflux are calculated using the zgrid * Remap fluxes to native grid * Apply tracer convergence in the native grid TODO: * cleanup * create a zgrid for each pair of column taking into consideration h_L, h_R, BLD_L and BLD_R.
* Add functions to merge thicknesses and BLDs * z_top is now defined every time-step using this information * added unit tests
* adding new functions to sort, swap, and remove duplications in 1D arrays * updating unit tests * clean the module
…idate-ncar-2020-08-11
* Adding a clock for LBD * Delete unecessary comments and clean up the code * Polish doxumentation
Make long character variables deferred length
z_max = min(BLD_max, H_min), where BLD_max is the deepest BLD and H_min is the shallowest water column depth.
A few fixes to get it to compile with gfortran.
Introduce a controllable stdout unit in MOM_io
…ed_10nov2020 Major updates to the LBD module
…-ncar-2020-12-15 Main candidate from NCAR (12/15/2020)
…update-to-GFDL-20201215 this is corresponding to GFDL main branch commit 20201218 (hash # 0f664aa)
Feature/update to gfdl 20201215
pjpegion
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Jun 15, 2022
Added comments describing all of the real variables in the src/core directory that did not previously have them, and corrected multiple spelling error in this same directory. This PR also updates the description of the MOM6 code structure in MOM.F90 and adds dimensional descriptions to the commends describing a number of variables. Descriptions of the units of some variables were also added or corrected in a number of the src/tracer files. Changes are largely restricted to comments describing varibles, although a few unused variables were removed. One comment added to MOM_dynamics_split_RK2.F90 notes a possible memory leak, due to a missing deallocate call, but the actual correction of this leak will be delayed to a later, much more targeted commit. All answers and output are bitwise identical.
pjpegion
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Jul 13, 2022
Note that most of these commits are from previously squashed pull requests, and this PR is restoring them. - 6360dbb Merge branch 'main' into main_to_dev - bac8031 Merge pull request mom-ocean#1566 from jiandewang/EMC-FMS-mixed-mode-20220411 - e532d86 Merge pull request NOAA-EMC#88 from marshallward/missing_attrib_with_class_bugfix - d380f1d An alternate fix to class(*) issues with FMS 2022-01 - 8ecf333 Merge pull request NOAA-EMC#87 from jiandewang/feature/update-to-main-20220317 - ba37f94 Merge remote-tracking branch 'FSU/main' into feature/update-to-main-20220317 this is corresponding to MOM6 main 20220317 commit (hash # 399a7db) - 44313d9 Merge pull request NOAA-EMC#85 from jiandewang/feature/update-to-main-20220217 - 966707f Merge remote-tracking branch 'GFDL/main' into feature/update-to-main-20220217 this is corresponding to MOM6 main branch 20220217 commit (hash # 6f6d4d6), which originally based on GFDL-candidate-20220129 - 32c0e1e Merge pull request NOAA-EMC#81 from jiandewang/feature/update-to-main-20211220 - 9642b1d delete external/OCEAN_stochastic_phyiscs directory as Phil re-coded in external/stochastic_physics directory - e7c9ada solve minor conflict in mom_cap.F90 mom_ocean_model_nuopc.F90 and MOM_energetic_PBL.F90, add two new files: src/parameterizations/stochastic/MOM_stochastics.F90 and config_src/external/stochastic_physics/stochastic_physics.F90 - 90d5961 Merge pull request NOAA-EMC#78 from jiandewang/feature/update-to-GFDL-20211019 - fd02017 Merge remote-tracking branch 'GFDL/main' into feature/update-to-GFDL-20211019 - 36f17eb Merge pull request NOAA-EMC#72 from pjpegion/ocn_stoch_july2021 - a9a957e return a more accurate error message in MOM_stochasics - 56bb41e Merge branch 'ocn_stoch_july2021' of https://github.com/pjpegion/MOM6 into ocn_stoch_july2021 - ca2ae1c update to dev/emc - 14ca4a1 Merge pull request NOAA-EMC#76 from jiandewang/feature/update-to-GFDL-20210914 - 29016c2 Merge remote-tracking branch 'GFDL/main' into feature/update-to-GFDL-20210914 merge GFDL main 20210914 commit (hash # c09e199) - a8577df Merge branch 'NOAA-EMC:dev/emc' into ocn_stoch_july2021 - f8a8e4c update to gfdl 20210806 (NOAA-EMC#74) - 16e6af0 update to dev/emc - 237a510 add comments - 1b4273d revert logic wrt increments - 5b2040e add logic to remove incrments from restart if outside IAU window - c5f2b72 add write_stoch_restart_ocn to MOM_stochastics - bdf2dc7 doxygen cleanup - 8bc4acc move stochastics to external directory - a3fa3a1 Merge remote-tracking branch 'upstream/dev/emc' into ocn_stoch_july2021 - e4bc007 stochastic physics re-write - 202cbd4 update to dev/emc - 61717ee Merge remote-tracking branch 'origin/dev/emc' into ocn_stoch - 565e0bb remove debug statements - a4c0411 Merge remote-tracking branch 'upstream/dev/emc' into ocn_stoch - 689a73f remove PE_here from mom_ocean_model_nuopc.F90 - 8afe969 clean up of mom_ocean_model_nuopc.F90 - 25ed4fc revert MOM_domains.F90 - b8d9888 place stochastic array in fluxes container and make SPPT specific arrays allocatable - d984a7e remove stochastics container - eb88219 clean up of code for MOM6 coding standards - 6e3ea1b correct coupled_driver/ocean_model_MOM.F90 and other cleanup - 0b99c1f make stochastics optional - 85023f8 Merge remote-tracking branch 'upstream/dev/emc' into ocn_stoch - 80f9f44 clean up MOM_domains - 5443f8e remove blank link in MOM_diagnostics - 1727d9a re-write of stochastic code to remove CPP directives - 600ebf9 Merge remote-tracking branch 'upstream/dev/emc' into ocn_stoch - 6bb9d0b fix non stochastic ePBL calculation - 1d7ffa3 clean up code - 040e1f1 Merge pull request #13 from NOAA-EMC/dev/emc - 2cba995 Merge branch 'dev/emc' into ocn_stoch - 1dc0f4f Merge remote-tracking branch 'upstream/dev/emc' into dev/emc - 4bd9b9e clean up debug statements - 25ed5ef additions for stochy restarts - a2a374b add stochy_restart writing to mom_cap - 0c15f4c Update MOM_diabatic_driver.F90 - 167a62e Merge pull request #12 from pjpegion/dev/emc - bd477a9 Update MOM_diabatic_driver.F90 - 7212400 Update MOM_diabatic_driver.F90 - 7de295c cleanup of code and enhancement of ePBL perts - cd06356 Merge pull request #11 from NOAA-EMC/dev/emc - 9896d61 Merge pull request #9 from pjpegion/dev/emc_merge - 0a62737 Merge branch 'ocn_stoch' into dev/emc_merge - 3cad1ba Merge pull request #8 from NOAA-EMC/dev/emc - c2aa2a8 updates from dev/emc - 182ef34 additions for stochastic physics and ePBL perts - 671c714 Merge pull request #1 from NOAA-EMC/dev/emc
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