Skip to content

Commit

Permalink
refactor(metadata): move CodeMeta to experimental IQSS#7844
Browse files Browse the repository at this point in the history
With the merge of computational workflow metadata considered
experimental, move CodeMeta there, too.
  • Loading branch information
poikilotherm committed Aug 1, 2022
1 parent 1229a06 commit c6c669c
Show file tree
Hide file tree
Showing 2 changed files with 1 addition and 2 deletions.
2 changes: 1 addition & 1 deletion doc/sphinx-guides/source/user/appendix.rst
Original file line number Diff line number Diff line change
Expand Up @@ -30,13 +30,13 @@ Detailed below are what metadata schemas we support for Citation and Domain Spec
`Virtual Observatory (VO) Discovery and Provenance Metadata <http://perma.cc/H5ZJ-4KKY>`__ (`see .tsv version <https://github.com/IQSS/dataverse/blob/master/scripts/api/data/metadatablocks/astrophysics.tsv>`__).
- `Life Sciences Metadata <https://docs.google.com/spreadsheet/ccc?key=0AjeLxEN77UZodHFEWGpoa19ia3pldEFyVFR0aFVGa0E#gid=2>`__ (`see .tsv version <https://github.com/IQSS/dataverse/blob/master/scripts/api/data/metadatablocks/biomedical.tsv>`__): based on `ISA-Tab Specification <https://isa-specs.readthedocs.io/en/latest/isamodel.html>`__, along with controlled vocabulary from subsets of the `OBI Ontology <http://bioportal.bioontology.org/ontologies/OBI>`__ and the `NCBI Taxonomy for Organisms <http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/>`__.
- `Journal Metadata <https://docs.google.com/spreadsheets/d/13HP-jI_cwLDHBetn9UKTREPJ_F4iHdAvhjmlvmYdSSw/edit#gid=8>`__ (`see .tsv version <https://github.com/IQSS/dataverse/blob/master/scripts/api/data/metadatablocks/journals.tsv>`__): based on the `Journal Archiving and Interchange Tag Set, version 1.2 <https://jats.nlm.nih.gov/archiving/tag-library/1.2/chapter/how-to-read.html>`__.
- `CodeMeta Software Metadata <https://docs.google.com/spreadsheets/d/e/2PACX-1vTE-aSW0J7UQ0prYq8rP_P_AWVtqhyv46aJu9uPszpa9_UuOWRsyFjbWFDnCd7us7PSIpW7Qg2KwZ8v/pub>`__: based on the `CodeMeta Software Metadata Schema, version 2.0 <https://codemeta.github.io/terms/>`__ (`see .tsv version <https://github.com/IQSS/dataverse/blob/master/scripts/api/data/metadatablocks/codemeta.tsv>`__)

Experimental Metadata
~~~~~~~~~~~~~~~~~~~~~

Unlike supported metadata, experimental metadata is not enabled by default in a new Dataverse installation. Feedback via any `channel <https://dataverse.org/contact>`_ is welcome!

- `CodeMeta Software Metadata <https://docs.google.com/spreadsheets/d/e/2PACX-1vTE-aSW0J7UQ0prYq8rP_P_AWVtqhyv46aJu9uPszpa9_UuOWRsyFjbWFDnCd7us7PSIpW7Qg2KwZ8v/pub>`__: based on the `CodeMeta Software Metadata Schema, version 2.0 <https://codemeta.github.io/terms/>`__ (`see .tsv version <https://github.com/IQSS/dataverse/blob/master/scripts/api/data/metadatablocks/codemeta.tsv>`__)
- `Computational Workflow Metadata <https://docs.google.com/spreadsheets/d/13HP-jI_cwLDHBetn9UKTREPJ_F4iHdAvhjmlvmYdSSw/edit#gid=447508596>`__ (`see .tsv version <https://github.com/IQSS/dataverse/blob/master/scripts/api/data/metadatablocks/computationalworkflow.tsv>`__): adapted from `Bioschemas Computational Workflow Profile, version 1.0 <https://bioschemas.org/profiles/ComputationalWorkflow/1.0-RELEASE>`__ and `Codemeta <https://codemeta.github.io/terms/>`__.

See Also
Expand Down
1 change: 0 additions & 1 deletion scripts/api/setup-datasetfields.sh
Original file line number Diff line number Diff line change
Expand Up @@ -7,4 +7,3 @@ curl http://localhost:8080/api/admin/datasetfield/load -X POST --data-binary @da
curl http://localhost:8080/api/admin/datasetfield/load -X POST --data-binary @data/metadatablocks/astrophysics.tsv -H "Content-type: text/tab-separated-values"
curl http://localhost:8080/api/admin/datasetfield/load -X POST --data-binary @data/metadatablocks/biomedical.tsv -H "Content-type: text/tab-separated-values"
curl http://localhost:8080/api/admin/datasetfield/load -X POST --data-binary @data/metadatablocks/journals.tsv -H "Content-type: text/tab-separated-values"
curl http://localhost:8080/api/admin/datasetfield/load -X POST --data-binary @data/metadatablocks/codemeta.tsv -H "Content-type: text/tab-separated-values"

0 comments on commit c6c669c

Please sign in to comment.