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pombo-lab

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  1. gamtools gamtools Public

    Processing, quality control and analysis of GAM datsets

    Python 9 14

  2. WinickNg_Kukalev_Harabula_Nature_2021 WinickNg_Kukalev_Harabula_Nature_2021 Public

    Collection of supplementary data and code for the publication W. Winick-Ng, A. Kukalev, I. Harabula "Cell-type specialization is encoded by specific chromatin topologies" (2021) Nature

    Python 4 1

  3. Meltron Meltron Public

    Forked from DominikSzabo1/Meltron

    a statistical framework to detect differences in chromatin contact density at genomic regions of interest

    R 3

  4. multiplex-gam-2023 multiplex-gam-2023 Public

    Analysis scripts for Multiplex-GAM paper (Beagrie, Thieme, Annunziatella et al. 2023)

    Jupyter Notebook 3 1

  5. GAM_trans_cis_ratio GAM_trans_cis_ratio Public

    Forked from DominikSzabo1/GAM_trans_cis_ratio

    Calculation of trans-cis NPMI ratios from GAM data

    R 1

  6. gamtools-guix gamtools-guix Public

    Forked from rbeagrie/gamtools-guix

    Guix channel definition for gamtools

    Scheme 1

Repositories

Showing 10 of 11 repositories
  • GAM_phaser Public
    pombo-lab/GAM_phaser’s past year of commit activity
    Perl 0 0 0 0 Updated Jun 27, 2024
  • multiplex-gam-2023 Public

    Analysis scripts for Multiplex-GAM paper (Beagrie, Thieme, Annunziatella et al. 2023)

    pombo-lab/multiplex-gam-2023’s past year of commit activity
    Jupyter Notebook 3 1 1 0 Updated Jun 24, 2024
  • Irastorza-Azcarate_Kukalev_Kempfer_2024 Public Forked from batxes/Irastorza-Azcarate_Kukalev_Kempfer_2024

    Code used to plot the figures in "Extensive folding variability between homologous chromosomes in mammalian cells"

    pombo-lab/Irastorza-Azcarate_Kukalev_Kempfer_2024’s past year of commit activity
    Python 0 1 0 0 Updated May 29, 2024
  • MELTRONIC Public Forked from DominikSzabo1/MELTRONIC

    Detection of chromatin melting and condensation events in regions of interest from GAM data

    pombo-lab/MELTRONIC’s past year of commit activity
    R 0 MIT 1 0 0 Updated Mar 26, 2024
  • 3DOmics Public
    pombo-lab/3DOmics’s past year of commit activity
    Shell 1 0 0 0 Updated Aug 29, 2023
  • gamtools Public

    Processing, quality control and analysis of GAM datsets

    pombo-lab/gamtools’s past year of commit activity
    Python 9 Apache-2.0 14 6 4 Updated Jun 13, 2023
  • gamtools-guix Public Forked from rbeagrie/gamtools-guix

    Guix channel definition for gamtools

    pombo-lab/gamtools-guix’s past year of commit activity
    Scheme 1 1 0 0 Updated Oct 28, 2022
  • WinickNg_Kukalev_Harabula_Nature_2021 Public

    Collection of supplementary data and code for the publication W. Winick-Ng, A. Kukalev, I. Harabula "Cell-type specialization is encoded by specific chromatin topologies" (2021) Nature

    pombo-lab/WinickNg_Kukalev_Harabula_Nature_2021’s past year of commit activity
    Python 4 1 0 0 Updated May 16, 2022
  • 4DN_JAWG_H1 Public
    pombo-lab/4DN_JAWG_H1’s past year of commit activity
    R 0 1 0 0 Updated Jan 13, 2022
  • GAM_trans_cis_ratio Public Forked from DominikSzabo1/GAM_trans_cis_ratio

    Calculation of trans-cis NPMI ratios from GAM data

    pombo-lab/GAM_trans_cis_ratio’s past year of commit activity
    R 1 MIT 1 0 0 Updated Nov 26, 2021
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