Collection of ENS analysis tools workflows

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Pradeep Rajasekhar edited this page Apr 6, 2022 · 2 revisions

Calcium Imaging

MESmerize software: A workflow to be shown soon.
Normalising to baseline or minima (F/Fmin or F/F0)
Temporal Colour coding

Segmenting Cells

FIJI:
- Iterative Thresholding
- StarDist (GAT)
Cellpose
GAT

3D segmentation

Cellpose: Try default models or train a model
Vollseg: Train a model