Scheduled #433
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# Run all unit tests and integration tests for all Python versions | |
# and platforms at 3am UTC every day and on PRs to the main branch | |
name: Scheduled | |
on: | |
workflow_dispatch: | |
pull_request: | |
branches: | |
- main | |
# Run every day at 3 am UTC | |
schedule: | |
- cron: "0 3 * * *" | |
env: | |
FORCE_COLOR: 3 | |
concurrency: | |
# github.workflow: name of the workflow, so that we don't cancel other workflows | |
# github.event.pull_request.number || github.ref: pull request number or branch name if not a pull request | |
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
# Cancel in-progress runs when a new workflow with the same group name is triggered | |
# This avoids workflow runs on both pushes and PRs | |
cancel-in-progress: true | |
jobs: | |
run_unit_tests: | |
name: Unit tests (${{ matrix.os }} / Python ${{ matrix.python-version }}) | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest, macos-12, macos-14, windows-latest] | |
python-version: ["3.9", "3.10", "3.11", "3.12"] | |
# Exclude Python 3.12 from unit tests since we run it in the coverage jobs | |
exclude: | |
- os: ubuntu-latest | |
python-version: "3.12" | |
steps: | |
- name: Check out PyBaMM repository | |
uses: actions/checkout@v4 | |
- name: Install Linux system dependencies | |
if: matrix.os == 'ubuntu-latest' | |
run: | | |
sudo apt-get update | |
sudo apt-get install gfortran gcc graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
- name: Install macOS system dependencies | |
if: matrix.os == 'macos-12' || matrix.os == 'macos-14' | |
env: | |
HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
HOMEBREW_NO_AUTO_UPDATE: 1 | |
HOMEBREW_NO_COLOR: 1 | |
# Speed up CI | |
NONINTERACTIVE: 1 | |
# sometimes gfortran cannot be found, so reinstall gcc just to be sure | |
run: | | |
brew analytics off | |
brew install graphviz libomp | |
brew reinstall gcc | |
- name: Install Windows system dependencies | |
if: matrix.os == 'windows-latest' | |
run: choco install graphviz --version=8.0.5 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install nox | |
run: python -m pip install nox | |
- name: Install SuiteSparse and SUNDIALS on GNU/Linux and macOS | |
timeout-minutes: 10 | |
if: matrix.os != 'windows-latest' | |
run: python -m nox -s pybamm-requires | |
- name: Run unit tests for ${{ matrix.os }} with Python ${{ matrix.python-version }} | |
run: python -m nox -s unit | |
check_coverage: | |
runs-on: ubuntu-latest | |
name: Coverage tests (ubuntu-latest / Python 3.12) | |
steps: | |
- name: Check out PyBaMM repository | |
uses: actions/checkout@v4 | |
- name: Install Linux system dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install gfortran gcc graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
- name: Set up Python 3.12 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.12 | |
- name: Install nox | |
run: python -m pip install nox | |
- name: Install SuiteSparse and SUNDIALS on GNU/Linux | |
timeout-minutes: 10 | |
run: python -m nox -s pybamm-requires | |
- name: Run unit tests for Ubuntu with Python 3.12 and generate coverage report | |
run: python -m nox -s coverage | |
- name: Upload coverage report | |
uses: codecov/codecov-action@v4.5.0 | |
if: github.repository == 'pybamm-team/PyBaMM' | |
with: | |
token: ${{ secrets.CODECOV_TOKEN }} | |
run_integration_tests: | |
name: Integration tests (${{ matrix.os }} / Python ${{ matrix.python-version }}) | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest, macos-12, macos-14, windows-latest] | |
python-version: ["3.9", "3.10", "3.11", "3.12"] | |
steps: | |
- name: Check out PyBaMM repository | |
uses: actions/checkout@v4 | |
- name: Install Linux system dependencies | |
if: matrix.os == 'ubuntu-latest' | |
run: | | |
sudo apt-get update | |
sudo apt-get install gfortran gcc graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
- name: Install macOS system dependencies | |
if: matrix.os == 'macos-12' || matrix.os == 'macos-14' | |
env: | |
HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
HOMEBREW_NO_AUTO_UPDATE: 1 | |
HOMEBREW_NO_COLOR: 1 | |
# Speed up CI | |
NONINTERACTIVE: 1 | |
# sometimes gfortran cannot be found, so reinstall gcc just to be sure | |
run: | | |
brew analytics off | |
brew install graphviz | |
brew reinstall gcc | |
- name: Install Windows system dependencies | |
if: matrix.os == 'windows-latest' | |
run: choco install graphviz --version=8.0.5 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install nox | |
run: python -m pip install nox | |
- name: Install SuiteSparse and SUNDIALS on GNU/Linux and macOS | |
timeout-minutes: 10 | |
if: matrix.os != 'windows-latest' | |
run: python -m nox -s pybamm-requires | |
- name: Run integration tests for ${{ matrix.os }} with Python ${{ matrix.python-version }} | |
run: python -m nox -s integration | |
# Skips IDAKLU module compilation for speedups, which is already tested in other jobs. | |
run_doctests: | |
runs-on: ubuntu-latest | |
name: Doctests (ubuntu-latest / Python 3.11) | |
steps: | |
- name: Check out PyBaMM repository | |
uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Install Linux system dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
- name: Set up Python 3.11 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.11 | |
- name: Install nox | |
run: python -m pip install nox | |
- name: Install docs dependencies and run doctests for GNU/Linux | |
run: python -m nox -s doctests | |
- name: Check if the documentation can be built for GNU/Linux | |
run: python -m nox -s docs | |
run_example_tests: | |
runs-on: ubuntu-latest | |
name: Example notebooks (ubuntu-latest / Python 3.12) | |
steps: | |
- name: Check out PyBaMM repository | |
uses: actions/checkout@v4 | |
- name: Install Linux system dependencies | |
run: | | |
sudo apt-get update | |
sudo apt-get install gfortran gcc graphviz pandoc libopenblas-dev texlive-latex-extra dvipng | |
- name: Set up Python 3.12 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.12 | |
- name: Install nox | |
run: python -m pip install nox | |
- name: Install SuiteSparse and SUNDIALS on GNU/Linux | |
timeout-minutes: 10 | |
run: python -m nox -s pybamm-requires | |
- name: Run example notebooks tests for GNU/Linux with Python 3.12 | |
run: python -m nox -s examples | |
run_scripts_tests: | |
runs-on: ubuntu-latest | |
name: Example scripts (ubuntu-latest / Python 3.12) | |
steps: | |
- name: Check out PyBaMM repository | |
uses: actions/checkout@v4 | |
- name: Install Linux system dependencies | |
run: | | |
sudo apt-get update | |
sudo apt install gfortran gcc graphviz libopenblas-dev texlive-latex-extra dvipng | |
- name: Set up Python 3.12 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.12 | |
- name: Install nox | |
run: python -m pip install nox | |
- name: Install SuiteSparse and SUNDIALS on GNU/Linux | |
timeout-minutes: 10 | |
run: python -m nox -s pybamm-requires | |
- name: Run example scripts tests for GNU/Linux with Python 3.12 | |
run: python -m nox -s scripts | |
# M-series Mac Mini | |
build-apple-mseries: | |
if: github.repository_owner == 'pybamm-team' | |
runs-on: [self-hosted, macOS, ARM64] | |
env: | |
GITHUB_PATH: ${PYENV_ROOT/bin:$PATH} | |
LD_LIBRARY_PATH: $HOME/.local/lib | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.9", "3.10", "3.11", "3.12"] | |
steps: | |
- name: Check out PyBaMM repository | |
uses: actions/checkout@v4 | |
- name: Install Python & create virtualenv | |
shell: bash | |
run: | | |
eval "$(pyenv init -)" | |
pyenv install ${{ matrix.python-version }} -s | |
pyenv virtualenv ${{ matrix.python-version }} pybamm-${{ matrix.python-version }} | |
- name: Install build-time dependencies & run unit tests for M-series macOS runner | |
shell: bash | |
env: | |
HOMEBREW_NO_INSTALL_CLEANUP: 1 | |
NONINTERACTIVE: 1 | |
run: | | |
eval "$(pyenv init -)" | |
pyenv activate pybamm-${{ matrix.python-version }} | |
python -m pip install --upgrade pip nox | |
python -m nox -s pybamm-requires -- --force | |
python -m nox -s unit | |
- name: Run integration tests for M-series macOS runner | |
run: | | |
eval "$(pyenv init -)" | |
pyenv activate pybamm-${{ matrix.python-version }} | |
python -m nox -s integration | |
- name: Uninstall pyenv-virtualenv & Python | |
if: always() | |
shell: bash | |
run: | | |
eval "$(pyenv init -)" | |
pyenv activate pybamm-${{ matrix.python-version }} | |
pyenv uninstall -f $( python --version ) |