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Adds Monte Carlo Samplers #340

Merged
merged 44 commits into from
Sep 2, 2024
Merged

Adds Monte Carlo Samplers #340

merged 44 commits into from
Sep 2, 2024

Commits on May 24, 2024

  1. feat: initial Monte Carlo classes

    @BradyPlanden
    BradyPlanden committed May 24, 2024
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Commits on Jun 3, 2024

  1. feat: updt __init__.py, add LogPosterior

    @BradyPlanden
    BradyPlanden committed Jun 3, 2024
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  2. tests: add unit tests for MCMC samplers

    @BradyPlanden
    BradyPlanden committed Jun 3, 2024
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  3. Merge branch 'develop' into monte-carlo-methods

    @BradyPlanden
    BradyPlanden committed Jun 3, 2024
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  4. fix parallel for windows

    @BradyPlanden
    BradyPlanden committed Jun 3, 2024
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  5. tests: additional unit tests, refactors priors class

    @BradyPlanden
    BradyPlanden committed Jun 3, 2024
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Commits on Jun 5, 2024

  1. tests: increase coverage, adds monte carlo integration test

    @BradyPlanden
    BradyPlanden committed Jun 5, 2024
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  2. tests: increase coverage, bugfix multi_log_pdf logic

    @BradyPlanden
    BradyPlanden committed Jun 5, 2024
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  3. tests: increase coverage, update priors on intesampling integration t… 

    …ests
    @BradyPlanden
    BradyPlanden committed Jun 5, 2024
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  4. tests: increment coverage, refactor prior np.inf catch

    @BradyPlanden
    BradyPlanden committed Jun 5, 2024
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  5. refactor: removes redundant code

    @BradyPlanden
    BradyPlanden committed Jun 5, 2024
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Commits on Jun 7, 2024

  1. Merge branch 'develop', updts for Parameters class

    @BradyPlanden
    BradyPlanden committed Jun 7, 2024
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  2. refactor: adds improvements from parameters class

    @BradyPlanden
    BradyPlanden committed Jun 7, 2024
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Commits on Jun 15, 2024

  1. feat: Adds burn-in functionality for sampling class

    @BradyPlanden
    BradyPlanden committed Jun 15, 2024
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Commits on Jun 17, 2024

  1. Merge branch 'develop' into monte-carlo-methods

    @BradyPlanden
    BradyPlanden authored Jun 17, 2024
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Commits on Jun 18, 2024

  1. Merge branch 'develop' into monte-carlo-methods

    @BradyPlanden
    BradyPlanden committed Jun 18, 2024
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  2. fix: correct sigma0 to cov0

    @BradyPlanden
    BradyPlanden committed Jun 18, 2024
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Commits on Jul 3, 2024

  1. Merge branch 'develop' into monte-carlo-methods

    @BradyPlanden
    BradyPlanden committed Jul 3, 2024
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  2. refactor: move general methods into parent class, replace burn_in wit… 

    …h warm_up
    @BradyPlanden
    BradyPlanden committed Jul 3, 2024
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Commits on Jul 4, 2024

  1. Merge branch 'develop' into monte-carlo-methods

    @BradyPlanden
    BradyPlanden authored Jul 4, 2024
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  2. Apply suggestions from code review

    @BradyPlanden
    BradyPlanden authored Jul 4, 2024
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Commits on Jul 16, 2024

  1. Merge branch 'develop' into monte-carlo-methods

    @BradyPlanden
    BradyPlanden committed Jul 16, 2024
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  2. Merge branch 'develop' into monte-carlo-methods

    @BradyPlanden
    BradyPlanden committed Jul 16, 2024
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Commits on Jul 21, 2024

  1. refactor: log_pdf to base class, update docstrings.

    @BradyPlanden
    BradyPlanden committed Jul 21, 2024
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Commits on Jul 22, 2024

  1. Adds catches and initialisation for x0, update tests

    @BradyPlanden
    BradyPlanden committed Jul 22, 2024
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Commits on Aug 6, 2024

  1. Merge branch 'refs/heads/develop' into monte-carlo-methods 

    # Conflicts:
#	CHANGELOG.md
    @BradyPlanden
    BradyPlanden committed Aug 6, 2024
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Commits on Aug 7, 2024

  1. feat: updates for transformation class, cleanup

    @BradyPlanden
    BradyPlanden committed Aug 7, 2024
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  2. fix: uniformly apply bound transformations, update LogPosterior

    @BradyPlanden
    BradyPlanden committed Aug 7, 2024
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  3. Merge branch 'refs/heads/develop' into monte-carlo-methods

    @BradyPlanden
    BradyPlanden committed Aug 7, 2024
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  4. Merge branch 'refs/heads/develop' into monte-carlo-methods

    @BradyPlanden
    BradyPlanden committed Aug 7, 2024
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Commits on Aug 13, 2024

  1. Merge branch 'refs/heads/develop' into monte-carlo-methods 

    # Conflicts:
#	CHANGELOG.md
    @BradyPlanden
    BradyPlanden committed Aug 13, 2024
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  2. refactor: ComposedLogPrior -> JointLogPrior, prior.evaluateS1 -> logp… 

    …dfS1, suggestions from review
    @BradyPlanden
    BradyPlanden committed Aug 13, 2024
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  3. fix: update tests for low convergence sampler

    @BradyPlanden
    BradyPlanden committed Aug 13, 2024
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Commits on Aug 14, 2024

  1. refactor: update priors, refactor JointLogPrior

    @BradyPlanden
    BradyPlanden committed Aug 14, 2024
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  2. tests: update unit tests and increase coverage.

    @BradyPlanden
    BradyPlanden committed Aug 14, 2024
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  3. refactor: base_sampler init, update docstrings, update tests, remove … 

    …potential thread deadlock in optimisation_options test
    @BradyPlanden
    BradyPlanden committed Aug 14, 2024
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  4. tests: increase coverage, remove redundant ValueError, sampler.chains… 

    … now optional arg with default=1
    @BradyPlanden
    BradyPlanden committed Aug 14, 2024
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  5. tests: restore parallel optimisation with thread limit to 1

    @BradyPlanden
    BradyPlanden committed Aug 14, 2024
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Commits on Aug 22, 2024

  1. Merge branch 'refs/heads/develop' into monte-carlo-methods

    @BradyPlanden
    BradyPlanden committed Aug 22, 2024
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  2. Merge branch 'refs/heads/develop' into monte-carlo-methods 

    # Conflicts:
#	CHANGELOG.md
    @BradyPlanden
    BradyPlanden committed Aug 22, 2024
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Commits on Aug 29, 2024

  1. Merge branch 'refs/heads/develop' into monte-carlo-methods 

    # Conflicts:
#	CHANGELOG.md
    @BradyPlanden
    BradyPlanden committed Aug 29, 2024
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  2. Refactor and bugfixes. Adds gradient-based integration sampling tests… 

    … via thevenin.
    @BradyPlanden
    BradyPlanden committed Aug 29, 2024
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Commits on Aug 30, 2024

  1. Remainder review suggestions, update assert tolerances, small array d… 

    …imensions bugfix for single parameter inference
    @BradyPlanden
    BradyPlanden committed Aug 30, 2024
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Commits on Sep 2, 2024

  1. tests: increment iterations from scheduled test run

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    BradyPlanden committed Sep 2, 2024
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