Type annotate tests #5728
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Type annotate tests #5728
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Hello @max-sixty! Thanks for updating this PR. We checked the lines you've touched for PEP 8 issues, and found:
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…y005/xarray into groupby_npg * 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray: Bump actions/github-script from 4.0.2 to 4.1 (pydata#5730) Set coord name concat when `concat`ing along a DataArray (pydata#5611) Add .git-blame-ignore-revs (pydata#5708) Type annotate tests (pydata#5728) Consolidate TypeVars in a single place (pydata#5569) add storage_options arg to to_zarr (pydata#5615) dataset `__repr__` updates (pydata#5580) Xfail failing test on main (pydata#5729) Add xarray-dataclasses to ecosystem in docs (pydata#5725) extend show_versions (pydata#5724) Move docstring for xr.set_options to numpy style (pydata#5702) Refactor more groupby and resample tests (pydata#5707) Remove suggestion to install pytest-xdist in docs (pydata#5713) Add typing to the OPTIONS dict (pydata#5678) Change annotations to allow str keys (pydata#5690) Whatsnew for float-to-top (pydata#5714) Use isort's float-to-top (pydata#5695) Fix errors in test_latex_name_isnt_split for min environments (pydata#5710) Improves rendering of complex LaTeX expressions as `long_name`s when plotting (pydata#5682) Use same bool validator as other inputs (pydata#5703)
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Closes #5734
Closes #4473
Closes #4498
Closes #659
Closes #2237
xref https://github.com/pangeo-data/pangeo/issues/271
Co-authored-by: Anderson Banihirwe <axbanihirwe@ualr.edu>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com>
Co-authored-by: Mathias Hauser <mathause@users.noreply.github.com>
Co-authored-by: Stephan Hoyer <shoyer@google.com>
Squashed commit of the following:
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Merge: 3ab03ee09 c34ef8a60
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date: Thu May 12 17:49:31 2022 -0600
Merge branch 'main' into groupby-aggs-using-numpy-groupies
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Merge: ad33d8512 11041bdfd
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date: Wed May 11 13:31:45 2022 -0600
Merge branch 'main' into groupby-aggs-using-numpy-groupies
commit ad33d85123dc28a374b1dfee41a2a35aba4a654c
Author: dcherian <deepak@cherian.net>
Date: Tue May 10 13:20:02 2022 -0600
Deduplicate
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Author: dcherian <deepak@cherian.net>
Date: Tue May 10 11:54:00 2022 -0600
Update whats-new
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Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date: Mon May 9 22:16:50 2022 +0200
Ignore typing when flox is not available
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Merge branch 'main' into pr/5734
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Merge: c38ef7868 4a384fd06
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Merge branch 'groupby-aggs-using-numpy-groupies' of https://github.com/andersy005/xarray into pr/5734
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Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date: Thu May 5 23:21:09 2022 +0200
Update resample.py
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commit 2ee1de40d4b0e343ff120c744a43e45ef2508ed5
Merge: 32828090d 4f7ef6d1c
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date: Thu May 5 23:11:21 2022 +0200
Merge branch 'groupby-aggs-using-numpy-groupies' of https://github.com/andersy005/xarray into pr/5734
commit 32828090d0c031e3ad0b13ff7e04832f61265749
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date: Thu May 5 23:09:01 2022 +0200
Copy/paste instead of a for loop
Hopefully mypy will be satisfied
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commit 1ac3281242c0a9d73e579c0aa14eb481e513dd63
Merge: 444feee5c 6fbeb1310
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date: Thu May 5 22:34:09 2022 +0200
Merge branch 'main' into pr/5734
commit 444feee5c0176390f4e0bf95a32decf179e5d9f2
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date: Thu May 5 22:32:19 2022 +0200
Try subclassing to ResampleBase-classes
Resample assumes having self._group_dim but that was never defined earlier, mypy should complain about this if the class was typed.
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Update resample.py
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Date: Thu May 5 20:46:49 2022 +0200
Update _reductions.py
commit 687beacc4696008489b00a68335f674b1b0719ba
Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date: Thu May 5 20:19:53 2022 +0200
Update _reductions.py
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Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date: Thu May 5 20:02:30 2022 +0200
Test adding back dummy methods.
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Merge: 36c206ede 126051f2b
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date: Wed May 4 21:50:36 2022 -0600
Merge branch 'main' into groupby-aggs-using-numpy-groupies
commit 36c206ede789c1567f6d4fd7baa0746c6877aae1
Author: dcherian <deepak@cherian.net>
Date: Wed May 4 09:15:40 2022 -0600
Clean up resampling.
Add Resample._flox_reduce.
Change inheritance order to make things work.
commit b2b3001255bf440e9f2907297d091ae4b02dbc28
Author: dcherian <deepak@cherian.net>
Date: Tue May 3 09:58:01 2022 -0600
[skip-ci] Fix whats-new.
commit 6902de318e15f88d9dd33479a2e061ad318c3ef0
Author: dcherian <deepak@cherian.net>
Date: Tue May 3 09:18:25 2022 -0600
Better defaults for resample
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Author: dcherian <deepak@cherian.net>
Date: Tue May 3 09:13:24 2022 -0600
[skip-ci] add whats-new
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Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date: Tue May 3 08:50:22 2022 -0600
Update ci/requirements/min-all-deps.yml
commit 2d1de0fcd08fe135bb721ee8382a0d54282529f2
Author: dcherian <deepak@cherian.net>
Date: Mon May 2 14:38:06 2022 -0600
Add flox to min_all_deps
commit 5337bd4160d5c73cf145c4710b40e2ece8aef737
Merge: 5583e342c cf8f1d6fc
Author: dcherian <deepak@cherian.net>
Date: Mon May 2 14:28:09 2022 -0600
Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies
* upstream/main:
[pre-commit.ci] pre-commit autoupdate (#6562)
Run mypy tests (but always pass) (#6557)
Update issue template to include a checklist (#6522)
Remove duplicate tests, v3 (#6550)
Skip mypy tests in CI (#6552)
Direct usage questions to GH discussions (#6539)
Revert "Attempt to improve CI caching (#6534)" (#6543)
Revert "Remove duplicate tests (#6536)" (#6540)
Remove duplicate tests (#6536)
Add a slighly cheesy contributors panel to readme (#6520)
Fix doctest & mypy CI jobs (#6535)
Attempt to improve CI caching (#6534)
Attempt to consolidate tests in CI (#6533)
Restrict annotations to a single run in GHA (#6532)
Fix some mypy issues (#6531)
Pin version of black in pre-commit blackdoc (#6492)
Scale numfocus image in readme (#6519)
Use new importlib.metadata.entry_points interface where available. (#6516)
Add a badge for binder (#6518)
Bump codecov/codecov-action from 3.0.0 to 3.1.0 (#6509)
commit 5583e342cc187d6f14bf43cc36c53d9916345e58
Author: dcherian <deepak@cherian.net>
Date: Mon Apr 25 20:50:03 2022 -0600
Set default to "split-reduce" to reduce surprises
commit eae37e2fd629abe2558f230b2f496b49cfd4c8a6
Author: dcherian <deepak@cherian.net>
Date: Mon Apr 25 20:45:44 2022 -0600
Properly support numeric_only
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Merge: 3a7052e66 d0a412a0e
Author: dcherian <deepak@cherian.net>
Date: Sat Apr 23 18:48:41 2022 -0600
Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby-aggs-using-numpy-groupies
* 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray:
Update ci/requirements/environment-windows.yml
commit 3a7052e66f3d287247759733a29a7118ea5c4f22
Author: dcherian <deepak@cherian.net>
Date: Sat Apr 23 18:47:30 2022 -0600
Support numeric_only
commit 56272775242b96cd5cbe416184b30aa0b8b2f1e7
Merge: d61377964 33cdabd26
Author: dcherian <deepak@cherian.net>
Date: Sat Apr 23 18:26:23 2022 -0600
Merge branch 'main' into groupby-aggs-using-numpy-groupies
* main: (26 commits)
Remove xarray.ufuncs (#6491)
Convert readme to markdown (#6495)
HTML repr fix for Furo Sphinx theme (#6501)
Restrict stalebot on projects & milestones (#6498)
Ensure datetime-like variables are left unmodified by `decode_cf_variable` (#6489)
Add link to xarray binder to readme (#6494)
Add details section to issue template (#6486)
[skip-ci] Redirect raster analysis questions to rioxarray (#6455)
Accessing the Exception message via e.args[0] (#6451)
Add support in the "zarr" backend for reading NCZarr data (#6420)
Propagate MultiIndex variables in broadcast (#6477)
Fix whatnsew build error (#6480)
allow other and drop arguments in where (gh#6466) (#6467)
[pre-commit.ci] pre-commit autoupdate (#6472)
Fix `xr.where(..., keep_attrs=True)` bug (#6461)
Fix `Number` import (#6474)
Support **kwargs form in `.chunk()` (#6471)
Bump actions/upload-artifact from 2 to 3 (#6468)
Bump codecov/codecov-action from 2.1.0 to 3.0.0 (#6470)
Bump actions/download-artifact from 2 to 3 (#6469)
...
commit d0a412a0e7fdfdc2f8cc02dfcf6279ededfea586
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date: Wed Apr 13 11:36:40 2022 -0600
Update ci/requirements/environment-windows.yml
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Merge: d61377964 b4c943e80
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date: Wed Apr 13 11:36:10 2022 -0600
Merge branch 'main' into groupby-aggs-using-numpy-groupies
commit d613779646d8ec77f852eb0558fbdc3bb474874b
Author: dcherian <deepak@cherian.net>
Date: Sun Apr 10 08:41:09 2022 -0600
fix
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Merge: 3580ae3ca 158314abf
Author: dcherian <deepak@cherian.net>
Date: Sun Apr 10 08:32:33 2022 -0600
Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby-aggs-using-numpy-groupies
* 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray:
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Author: dcherian <deepak@cherian.net>
Date: Sun Apr 10 08:31:20 2022 -0600
fix
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commit 628406c8cab3021eff84ef679bf47b56dba42ec9
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Author: dcherian <deepak@cherian.net>
Date: Sun Apr 10 08:29:30 2022 -0600
Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby-aggs-using-numpy-groupies
* 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray:
[skip-ci] Apply suggestions from code review
commit 812ce333957224c8193a1ef53de8fc99ff600439
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date: Sun Apr 10 08:29:24 2022 -0600
[skip-ci] Apply suggestions from code review
Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com>
commit 4dd9e661def401105589d42bfd14a7bc3e48eb3c
Author: dcherian <deepak@cherian.net>
Date: Sun Apr 10 08:27:09 2022 -0600
Update envs
commit 9d4ee11bb6be58b00a382e6af7e7f6b781d3e80d
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date: Sun Apr 10 08:25:20 2022 -0600
[skip-ci] Apply suggestions from code review
Co-authored-by: Illviljan <14371165+Illviljan@users.noreply.github.com>
commit c176f8d21faa94929db1ee1609e9edc7a9556e41
Author: dcherian <deepak@cherian.net>
Date: Wed Mar 30 15:52:26 2022 +0530
Test cleanup
commit fd6aa17743cb360c6587309fa92ac0fd290a590b
Author: dcherian <deepak@cherian.net>
Date: Wed Mar 30 13:23:34 2022 +0530
fix
commit 87f94ba854277f65641b585b83b6edd5cbdc4756
Merge: 1a918021a facafac35
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date: Thu Apr 7 12:09:53 2022 -0600
Merge branch 'main' into groupby-aggs-using-numpy-groupies
commit 1a918021abb66033dc18498f50ce52bf4beae8e6
Merge: 2694dbea6 2e93d549d
Author: dcherian <deepak@cherian.net>
Date: Tue Mar 29 19:44:12 2022 +0530
Merge branch 'main' into groupby-aggs-using-numpy-groupies
* main: (23 commits)
Vectorize groupby binary ops (#6160)
Speed-up multi-index html repr + add display_values_threshold option (#6400)
[pre-commit.ci] pre-commit autoupdate (#6422)
Fix concat scalar coord dtype (#6418)
use the `DaskIndexingAdapter` for `duck dask` arrays (#6414)
Weighted quantile (#6059)
upgrade `sphinx` (#6415)
Add kwarg-only breaking change to whats-new (#6409)
[pre-commit.ci] pre-commit autoupdate (#6396)
fix DataArray groupby returning a Dataset (#6394)
reindex: fix missing variable metadata (#6389)
[skip-ci] Add benchmarks for groupby math (#6390)
Fix concat with scalar coordinate (#6385)
isel: convert IndexVariable to Variable if index is dropped (#6388)
fix dataset groupby combine dataarray func (#6386)
fix concat with variable or dataarray as dim (#6387)
#6367 Fix for time units checking could produce "unhashable type" error (#6368)
Explicit indexes (#5692)
Remove test_rasterio_vrt_network (#6371)
Allow write_empty_chunks to be set in Zarr encoding (#6348)
...
commit 2694dbea60310d83a02e91727c1de71f0eec4ec6
Author: dcherian <deepak@cherian.net>
Date: Sun Mar 13 11:10:49 2022 +0530
Test flox kwargs
commit e4125831e4c86df4752666bf27344fce99c77b02
Author: dcherian <deepak@cherian.net>
Date: Sun Mar 13 11:10:30 2022 +0530
Fix.
commit 705b3f00e001b93e5531b7801c48bbe98a4ffba1
Merge: 26d85d526 d535a3bf4
Author: dcherian <deepak@cherian.net>
Date: Sun Mar 13 09:52:51 2022 +0530
Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies
* upstream/main:
Run pyupgrade on core/groupby (#6351)
commit 26d85d5260a38e00f903e689b3819d51fb29f689
Author: dcherian <deepak@cherian.net>
Date: Sun Mar 13 09:43:45 2022 +0530
loooser test
commit a1769baf158629e84b6258069a22904de8f37fc4
Author: dcherian <deepak@cherian.net>
Date: Sun Mar 13 09:34:58 2022 +0530
polish
commit 94bcb32de46a152031b0da048d164608f7aa77c4
Merge: 62474a825 229dad93e
Author: dcherian <deepak@cherian.net>
Date: Sun Mar 13 09:27:55 2022 +0530
Merge branch 'main' into groupby-aggs-using-numpy-groupies
* main:
Generate reductions for DataArray, Dataset, GroupBy and Resample (#5950)
explicitly install `ipython_genutils` (#6350)
commit 62474a825edcd04567589d86db5f62a2b5ba5ec2
Merge: e348c7601 434db03e2
Author: dcherian <deepak@cherian.net>
Date: Thu Mar 10 10:12:59 2022 -0700
Merge branch 'generate-reductions-class' into groupby-aggs-using-numpy-groupies
* generate-reductions-class: (31 commits)
polish
update _reductions
Fixes
Apply suggestions from code review
Fix path
manual tweaks to make ci happy
Update _reductions.py
Write to file using open() instead.
force keyword args after dim
Annotate some reduction tests.
Update xarray/util/generate_reductions.py
Update xarray/util/generate_reductions.py
add doctests
more reduce
another reduce
one more reduce
more reduce edits
make reduce args consistent
updates
[pre-commit.ci] auto fixes from pre-commit.com hooks
...
commit 434db03e2f0d8e2c30b991c0866b80eb46348621
Author: dcherian <deepak@cherian.net>
Date: Thu Mar 10 09:47:58 2022 -0700
polish
commit e348c76012f7d33cdf84ece5ed00ddc6b59d5cf8
Merge: 3f3a197c8 d293f50f9
Author: dcherian <deepak@cherian.net>
Date: Wed Mar 9 09:43:30 2022 -0700
Merge branch 'main' into groupby-aggs-using-numpy-groupies
* main: (68 commits)
Bump actions/setup-python from 2 to 3 (#6338)
Bump actions/checkout from 2 to 3 (#6337)
In documentation on adding a new backend, add missing import and tweak headings (#6330)
Lengthen underline, correct spelling, and reword (#6326)
quantile: use skipna=None (#6303)
New whatsnew section
v2022.03.0 release notes (#6319)
fix typos (using codespell) (#6316)
Add General issue template (#6314)
Disable CI runs on forks (#6315)
Enable running sphinx-build on Windows (#6237)
Fix class attributes versus init parameters (#6312)
On Windows, enable successful test of opening a dataset containing a cftime index (#6305)
from_dict: doctest (#6302)
Drop duplicates over multiple dims, and add Dataset.drop_duplicates (#6307)
Amended docs on how to add a new backend (#6292)
Adding the new wrapper gsw-xarray (#6294)
Amended docstring to reflect the actual behaviour of Dataset.map (#6232)
Align language def in bugreport.yml with schema (#6290)
Move Zarr up in io.rst (#6289)
...
commit d5f627cf67204b78957a3bbc6147c455e54d080b
Author: dcherian <deepak@cherian.net>
Date: Tue Mar 8 17:48:00 2022 -0700
update _reductions
commit ebe9985a328ca26ecc008719998d597d350c97de
Merge: 1fcd0808d d293f50f9
Author: dcherian <deepak@cherian.net>
Date: Tue Mar 8 17:44:58 2022 -0700
Merge branch 'main' into generate-reductions-class
* main: (71 commits)
Bump actions/setup-python from 2 to 3 (#6338)
Bump actions/checkout from 2 to 3 (#6337)
In documentation on adding a new backend, add missing import and tweak headings (#6330)
Lengthen underline, correct spelling, and reword (#6326)
quantile: use skipna=None (#6303)
New whatsnew section
v2022.03.0 release notes (#6319)
fix typos (using codespell) (#6316)
Add General issue template (#6314)
Disable CI runs on forks (#6315)
Enable running sphinx-build on Windows (#6237)
Fix class attributes versus init parameters (#6312)
On Windows, enable successful test of opening a dataset containing a cftime index (#6305)
from_dict: doctest (#6302)
Drop duplicates over multiple dims, and add Dataset.drop_duplicates (#6307)
Amended docs on how to add a new backend (#6292)
Adding the new wrapper gsw-xarray (#6294)
Amended docstring to reflect the actual behaviour of Dataset.map (#6232)
Align language def in bugreport.yml with schema (#6290)
Move Zarr up in io.rst (#6289)
...
commit 1fcd0808d3f925ecd5bb4f03c94d70136a332487
Author: dcherian <deepak@cherian.net>
Date: Tue Mar 8 16:59:43 2022 -0700
Fixes
commit 9799d87f1e45f2e20a55bab13af63f2d895666ee
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date: Tue Mar 8 16:57:55 2022 -0700
Apply suggestions from code review
Co-authored-by: Stephan Hoyer <shoyer@google.com>
commit 7b34077c1355d006155abf3cdb5bc289caae96a9
Author: dcherian <deepak@cherian.net>
Date: Wed Feb 16 09:50:49 2022 -0700
Fix path
commit cd51a15c3a779a2e11c47677887ba818e3b3162a
Merge: 8336c53c3 18703bafe
Author: dcherian <deepak@cherian.net>
Date: Wed Feb 16 09:46:04 2022 -0700
Merge branch 'main' into generate-reductions-class
* main: (32 commits)
Small typing fix (#6159)
Drop support for python 3.7 (#5892)
_season_from_months can now handle np.nan (#5876)
Use base ImportError not MoudleNotFoundError when trying to see if the (#6154)
Remove numpy from mypy pre-commit (#6151)
Change concat dims to be Hashable (#6121)
Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.5.0 (#6147)
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...
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Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date: Thu Jan 13 15:07:31 2022 -0700
Merge branch 'main' into groupby-aggs-using-numpy-groupies
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Author: dcherian <deepak@cherian.net>
Date: Wed Jan 12 17:02:49 2022 -0700
Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies
* upstream/main:
Add tests for groupby math (#6137)
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Merge: 41e43fe22 18703bafe
Author: dcherian <deepak@cherian.net>
Date: Wed Jan 12 11:18:24 2022 -0700
Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies
* upstream/main: (23 commits)
Small typing fix (#6159)
Drop support for python 3.7 (#5892)
_season_from_months can now handle np.nan (#5876)
Use base ImportError not MoudleNotFoundError when trying to see if the (#6154)
Remove numpy from mypy pre-commit (#6151)
Change concat dims to be Hashable (#6121)
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Remove pd.Panel checks (#6145)
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New algorithm for forward filling (#6118)
Limit and format number of displayed dimensions in repr (#5662)
Add labels to dataset diagram (#6076)
Deprecate bool(ds) (#6126)
Revert "disable pytest-xdist (to check CI failure)" (#6127)
...
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Author: dcherian <deepak@cherian.net>
Date: Wed Dec 29 17:08:38 2021 -0700
fix tests
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Date: Wed Dec 29 11:30:34 2021 -0700
fix tests
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Date: Wed Dec 29 09:48:28 2021 -0700
Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies
* upstream/main:
Replace markdown issue templates with issue forms (#6119)
Remove lock kwarg (#5912)
Remove pre-commit GHA workflow (#6120)
is_dask_collection: micro optimization (#6107)
Revert "Single matplotlib import (#5794)" (#6064)
Add support for cross product (#5365)
assert ds errors in test_backends (#6122)
assert ds errors in test_dataset.py (#6123)
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Author: dcherian <deepak@cherian.net>
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fix tests
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Date: Tue Dec 28 11:27:29 2021 -0700
use_numpy_groupies → use_flox
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Date: Tue Dec 28 11:23:49 2021 -0700
Merge branch 'main' into groupby-aggs-using-numpy-groupies
* main:
[pre-commit.ci] pre-commit autoupdate (#6115)
Make CI pass by limiting dask version (#6111)
Fix mypy precommit (#6110)
[pre-commit.ci] pre-commit autoupdate (#6088)
Add type definitions in prep for #6086 (#6090)
Replace distutils.version with packaging.version (#6096)
Attempt datetime coding using cftime when pandas fails (#6049)
fix tests for h5netcdf v0.12 (#6097)
disable pytest-xdist (to check CI failure) (#6077)
cftime: 'gregorian' -> 'standard' [test-upstream] (#6082)
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force keyword args after dim
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Merge branch 'main' into groupby-aggs-using-numpy-groupies
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Merge remote-tracking branch 'upstream/main' into generate-reductions-class
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Fixed a mispelling of dimension in dataarray documentation for from_dict (#6020)
[pre-commit.ci] pre-commit autoupdate (#6014)
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Author: Deepak Cherian <deepak@cherian.net>
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Annotate some reduction tests.
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Date: Thu Nov 25 21:42:56 2021 -0700
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Fixed a mispelling of dimension in dataarray documentation for from_dict (#6020)
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Update xarray/util/generate_reductions.py
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Squash merge #5950
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Update xarray/util/generate_reductions.py
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add doctests
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more reduce
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another reduce
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one more reduce
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more reduce edits
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make reduce args consistent
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Now get normal code running as well
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Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
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Attempt fixing typing errors
Mixing in DatasetReduce fixes:
xarray/tests/test_groupby.py:460: error: Invalid self argument "Dataset" to attribute function "mean" with type "Callable[[DatasetReduce, Optional[Hashable], Optional[bool], Optional[bool], KwArg(Any)], T_Dataset]" [misc]
Switching to "Dateset" as returned type fixes:
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Use set_options for asv bottleneck tests (#5986)
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Fix module name retrieval in `backend.plugins.remove_duplicates()`, plugin tests (#5959)
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commit c7e9d9647f2c7df7e5b14644926dc2126ad4318f
Author: dcherian <deepak@cherian.net>
Date: Wed Nov 10 11:49:47 2021 -0700
Minor improvement
commit dea8fd9f326a543807c26b6a62e84b28b5cb4cc3
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Date: Mon Nov 8 16:18:07 2021 -0700
REfactor
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Reorder docstring to match numpy
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Fixes #5898
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Minor docstring improvements.
commit a04ed824a55b757937a4db4aa65729dccf62c1a7
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Small changes
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Generate DataArray, Dataset reductions too.
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Add ddof for var, std
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Better generator for reductions.
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minimize conflicts
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Small improvement to resampling
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Update xarray/util/generate_reductions.py
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Bugfix DataArray resampling.
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add doctests
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one more reduce
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more reduce edits
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make reduce args consistent
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Now get normal code running as well
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Author: Illviljan <14371165+Illviljan@users.noreply.github.com>
Date: Sat Nov 20 12:30:50 2021 +0100
Attempt fixing typing errors
Mixing in DatasetReduce fixes:
xarray/tests/test_groupby.py:460: error: Invalid self argument "Dataset" to attribute function "mean" with type "Callable[[DatasetReduce, Optional[Hashable], Optional[bool], Optional[bool], KwArg(Any)], T_Dataset]" [misc]
Switching to "Dateset" as returned type fixes:
xarray/tests/test_groupby.py:77: error: Need type annotation for "expected" [var-annotated]
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Revert "Force failure to make sure CI is working."
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Force failure to make sure CI is working.
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Add to all-but-dask
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Date: Wed Nov 17 20:24:10 2021 -0700
Add to print_versions
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Author: dcherian <deepak@cherian.net>
Date: Tue Nov 16 10:13:05 2021 -0700
[test-upstream] Rename to flox
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Author: dcherian <deepak@cherian.net>
Date: Mon Nov 15 17:54:27 2021 -0700
[test-upstream] Revert setting npg option in benchmarks
commit ced9034d99e618c70ba397e3aee5f53a2e475fd0
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Update upstream-dev env
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add extra test
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fix test.
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Date: Mon Nov 15 14:30:03 2021 -0700
silence warning
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Date: Mon Nov 15 10:10:53 2021 -0700
Fix dimension order when binning a dimension coordinate
commit 03b7b31da98842a216801f422151bd4ab130d9cf
Author: dcherian <deepak@cherian.net>
Date: Sun Nov 14 20:39:48 2021 -0700
one more bugfix
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Merge: 43ade8cbd a883ed022
Author: dcherian <deepak@cherian.net>
Date: Sun Nov 14 20:34:01 2021 -0700
Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies
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Check for py version instead of try/except when importing entry_points (#5988)
Add "see also" in to_dataframe docs (#5978)
Alternate method using inline css to hide regular html output in an untrusted notebook (#5880)
Fix mypy issue with entry_points (#5979)
Remove pre-commit auto update (#5958)
Do not change coordinate inplace when throwing error (#5957)
Create CITATION.cff (#5956)
commit 43ade8cbdbcd2bf9fc950a6fc5f5d2078b56e86f
Author: dcherian <deepak@cherian.net>
Date: Sun Nov 14 20:32:06 2021 -0700
"blockwise" need not be the best strategy for resample..
commit c189eea36b3bb993451c2cb6765be4cd07449b67
Author: dcherian <deepak@cherian.net>
Date: Sun Nov 14 09:58:40 2021 -0700
Fix upsampling with resample
(these have "empty groups")
commit edbd376c792f54ade6a9447674b15a79f44c983b
Author: dcherian <deepak@cherian.net>
Date: Sun Nov 14 09:57:32 2021 -0700
Fix binning and weird issues with precision and pd.cut
commit 415eb294af77b36f481f3c934baf617d1f55bb1e
Author: dcherian <deepak@cherian.net>
Date: Fri Nov 12 15:47:10 2021 -0700
Fix bug when binning by nD variable.
commit e9af57c28638288532b470334547223221e1a397
Author: dcherian <deepak@cherian.net>
Date: Thu Nov 11 13:36:07 2021 -0700
Try fixing mypy
commit 9c2cbb8df424ff8d6e6c6faae5abc24c15a4e84b
Author: dcherian <deepak@cherian.net>
Date: Thu Nov 11 13:25:50 2021 -0700
Ppass through objects with only numpy or dask arrays
commit 35908b590d04f7c66508d6dcea30e6ed8351ac64
Author: dcherian <deepak@cherian.net>
Date: Wed Nov 10 14:33:44 2021 -0700
Revert "See if its an import error"
This reverts commit be53f13b1dd832a4ba221458f64f6c277998e9da.
commit be53f13b1dd832a4ba221458f64f6c277998e9da
Author: dcherian <deepak@cherian.net>
Date: Wed Nov 10 12:55:58 2021 -0700
See if its an import error
commit 11c3d3398a12b2abcd6fd1de0af689a5d673730f
Author: dcherian <deepak@cherian.net>
Date: Wed Nov 10 12:37:24 2021 -0700
Fixed doctests in dask_groupby
commit 77d2665458db1eec682c725e4dcdfef78454fc30
Author: dcherian <deepak@cherian.net>
Date: Wed Nov 10 12:12:39 2021 -0700
Revert "Force test failure to check CI env"
This reverts commit 31e1fd2419f54205616d59eb1ee176e7a61e07b2.
commit c7e9d9647f2c7df7e5b14644926dc2126ad4318f
Author: dcherian <deepak@cherian.net>
Date: Wed Nov 10 11:49:47 2021 -0700
Minor improvement
commit 47b593c481ecb93fe83dd6b9458d5683cc93119f
Author: dcherian <deepak@cherian.net>
Date: Wed Nov 10 09:10:39 2021 -0700
Use conda-forge numpy_groupies in CI
commit 31e1fd2419f54205616d59eb1ee176e7a61e07b2
Author: dcherian <deepak@cherian.net>
Date: Wed Nov 10 09:06:36 2021 -0700
Force test failure to check CI env
commit 0559ee151420c31ac713829b74c3148fdfd46fa5
Author: dcherian <deepak@cherian.net>
Date: Tue Nov 9 21:33:56 2021 -0700
Fix var, std doctests
commit 41f0aa5aaf89b83bee6eb8f9f87f497cb4efd31e
Author: dcherian <deepak@cherian.net>
Date: Tue Nov 9 19:27:57 2021 -0700
fix test
commit bece14e22794e5fadb9e3b3b34af920fcc2be77f
Author: dcherian <deepak@cherian.net>
Date: Tue Nov 9 17:41:13 2021 -0700
Fix median and add test.
commit b9bc1dd0dd6e73793315457e9c9e23cf52428b4c
Author: dcherian <deepak@cherian.net>
Date: Tue Nov 9 17:01:27 2021 -0700
Update reductions
commit 0ac5498c87492d595a6860d1bb2d1f4183b329e3
Author: dcherian <deepak@cherian.net>
Date: Tue Nov 9 10:12:40 2021 -0700
Avoid stacking by default
commit c9a82b3fe9d2dcc0ddee6015595be01a01d5ad00
Author: dcherian <deepak@cherian.net>
Date: Tue Nov 9 10:09:29 2021 -0700
Revert "Start supporting ndim groups"
This reverts commit 4ef53dbc9f84dc0a1a19f3b8cd17a3b4fd044296.
commit 35af40ad26ca9e2193313d7794789ec96cd7f0ba
Author: dcherian <deepak@cherian.net>
Date: Mon Nov 8 21:58:02 2021 -0700
Revert "WIP refactor init"
This reverts commit 6afb3bf82fbbc3a46a70d48eb74c0c9224d05bce.
commit 6afb3bf82fbbc3a46a70d48eb74c0c9224d05bce
Author: dcherian <deepak@cherian.net>
Date: Mon Nov 8 21:57:55 2021 -0700
WIP refactor init
commit 4ef53dbc9f84dc0a1a19f3b8cd17a3b4fd044296
Author: dcherian <deepak@cherian.net>
Date: Mon Nov 8 21:57:21 2021 -0700
Start supporting ndim groups
commit 583187a4118613f98d8a7082790724070a3df3ea
Author: dcherian <deepak@cherian.net>
Date: Mon Nov 8 21:08:53 2021 -0700
Fix benchmark to not groupby chunked variables.
commit 3e08964dca9371ff93139f67bbc6a0170c48c28d
Author: dcherian <deepak@cherian.net>
Date: Mon Nov 8 16:54:52 2021 -0700
Add benchmarks
commit 0c35c0c67dcd0852b08d4408c45e3790fc9b000e
Author: dcherian <deepak@cherian.net>
Date: Mon Nov 8 16:41:26 2021 -0700
Reimplemented
commit 0661c1b667436ca5fde59cd987a1a2db94d9a75e
Author: dcherian <deepak@cherian.net>
Date: Mon Nov 8 16:40:20 2021 -0700
Refactored generator
commit f06e6a7d5ec6575df9ac6772c6092dfa81980ae8
Author: dcherian <deepak@cherian.net>
Date: Mon Nov 8 16:24:11 2021 -0700
Revert "Separate out median"
This reverts commit 932b9a5d668278019bbd75ea23582ff28a463b91.
commit dea8fd9f326a543807c26b6a62e84b28b5cb4cc3
Author: dcherian <deepak@cherian.net>
Date: Mon Nov 8 16:18:07 2021 -0700
REfactor
commit 9bb2c321e8df2f5978c40a1c3c8f891c77e847ff
Author: dcherian <deepak@cherian.net>
Date: Mon Nov 8 13:56:53 2021 -0700
Reorder docstring to match numpy
commit 08911b9a155ca7a2f95b466fba1f97538d45f1a6
Merge: a2168df2d 20fddb7e3
Author: dcherian <deepak@cherian.net>
Date: Mon Nov 8 13:58:11 2021 -0700
Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies
* upstream/main:
Add groupby & resample benchmarks (#5922)
Fix plot.line crash for data of shape (1, N) in _title_for_slice on format_item (#5948)
Disable unit test comments (#5946)
Publish test results from workflow_run only (#5947)
commit 99bfe128066ec3ef1b297650a47e2dd0a45801a8
Author: dcherian <deepak@cherian.net>
Date: Mon Nov 8 12:44:23 2021 -0700
Fixes #5898
commit 7f39cc0d8c664e3fcf354536ed3a95882064b4b6
Author: dcherian <deepak@cherian.net>
Date: Mon Nov 8 12:39:00 2021 -0700
Minor docstring improvements.
commit a04ed824a55b757937a4db4aa65729dccf62c1a7
Author: dcherian <deepak@cherian.net>
Date: Mon Nov 8 12:35:48 2021 -0700
Small changes
commit 816e7941e47b14280103d5d10da94139f394c0cd
Author: dcherian <deepak@cherian.net>
Date: Sun Nov 7 20:56:37 2021 -0700
Generate DataArray, Dataset reductions too.
commit 569c67f28b3e7ff4c475793325a4388220932d02
Author: dcherian <deepak@cherian.net>
Date: Sun Nov 7 20:54:42 2021 -0700
Add ddof for var, std
commit 6b9a81a6fbe3ba460d905f0e92105d8e25af3ebb
Author: dcherian <deepak@cherian.net>
Date: Sun Nov 7 20:35:52 2021 -0700
Better generator for reductions.
commit a2168df2d595c4220a989fb99569196e0951d92f
Author: dcherian <deepak@cherian.net>
Date: Fri Nov 5 22:09:22 2021 -0600
typo again
commit d238459ae2bbe2a38f855e12ca4752c2fd28051c
Author: dcherian <deepak@cherian.net>
Date: Fri Nov 5 21:50:30 2021 -0600
any,all
commit ac85e72607594daf014e6afa50966289d5c1cc7f
Author: dcherian <deepak@cherian.net>
Date: Fri Nov 5 21:31:22 2021 -0600
make dask_groupby actually optional
commit 932b9a5d668278019bbd75ea23582ff28a463b91
Author: dcherian <deepak@cherian.net>
Date: Fri Nov 5 21:27:23 2021 -0600
Separate out median
commit ad25f78be0250de7cc574c7941b2149015dde26c
Author: dcherian <deepak@cherian.net>
Date: Fri Nov 5 19:52:36 2021 -0600
Add to asv env
commit 3608e9fa135ac93231cbf4f8bff007887a10e19d
Author: dcherian <deepak@cherian.net>
Date: Fri Nov 5 15:26:28 2021 -0600
get working again
commit faee02c7cb95dcc97a71e2fb0b2627c0ca49f2ed
Author: dcherian <deepak@cherian.net>
Date: Fri Nov 5 12:37:36 2021 -0600
fix env stuff + remove env var
commit 77f0e0e0765bcf335222ea0aad58b3700a76ea29
Merge: 0f2c59f7c 1ecf91a4d
Author: dcherian <deepak@cherian.net>
Date: Fri Nov 5 12:33:04 2021 -0600
Merge remote-tracking branch 'upstream/main' into groupby-aggs-using-numpy-groupies
* upstream/main: (27 commits)
Generator for groupby reductions (#5871)
whats-new dev
whats-new for 0.20.1 (#5943)
Docs: fix URL for PTSA (#5935)
Fix a missing @requires_zarr in tests (#5936)
fix the detection of backend entrypoints (#5931)
Explicitly list all reductions in api.rst (#5903)
DOC: add names of missing contributors to 0.20.0 (#5932)
new whats-new.rst section
Update open_rasterio deprecation version number (#5916)
v0.20 Release notes (#5924)
[skip-ci] v0.20.0: whats-new for release (#5905)
Update minimum dependencies for 0.20 (#5917)
Bump actions/github-script from 4.1 to 5 (#5826)
remove requirement for setuptools.pkg_resources (#5845)
Update docstring for apply_ufunc, set_options (#5904)
Display coords' units for slice plots (#5847)
Combine by coords dataarray bugfix (#5834)
Add .chunksizes property (#5900)
Add typing_extensions as a required dependency (#5911)
...
commit 0f2c59f7c31f8d2cd06d64ec3f4d69d87d2eeb85
Merge: 4b25db574 df7646182
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date: Tue Oct 26 17:01:49 2021 -0600
Merge branch 'main' of github.com:pydata/xarray into groupby-aggs-using-numpy-groupies
commit 4b25db574d9f13059d3b0d6319ae18f9e534b6d6
Merge: e3b3a00c6 262a3f5dd
Author: dcherian <deepak@cherian.net>
Date: Tue Oct 5 14:49:30 2021 +0530
Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby-aggs-using-numpy-groupies
* 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray:
Update ci/requirements/environment-windows.yml
commit e3b3a00c6a1e1e8cc8e20c1f2a1051efaafe9297
Author: dcherian <deepak@cherian.net>
Date: Tue Oct 5 14:48:25 2021 +0530
Fix resampling
commit 262a3f5dd3a22f82a719d61ac7a95758fa1d2e9b
Author: Deepak Cherian <dcherian@users.noreply.github.com>
Date: Mon Oct 4 11:10:44 2021 +0530
Update ci/requirements/environment-windows.yml
commit 9b44db9e6d3db00ab8301fe426768925e8a2ff2f
Author: dcherian <deepak@cherian.net>
Date: Mon Oct 4 10:45:39 2021 +0530
Fix keep_attrs test
commit b97ffcb37b416e93c5481d6ce363f74e61e88dbc
Author: dcherian <deepak@cherian.net>
Date: Mon Oct 4 10:44:04 2021 +0530
Fix windows env
commit f4748ee80fc993f9fd9a8b4dd76d242c778b64ae
Author: dcherian <deepak@cherian.net>
Date: Mon Oct 4 10:28:08 2021 +0530
typo
commit 1d9a36053181aeedbc90c3eec5a3457327630771
Author: dcherian <deepak@cherian.net>
Date: Mon Oct 4 10:21:33 2021 +0530
Add CI for now
commit 462e61b79f6ecfef24275622e84378673f9e9950
Author: dcherian <deepak@cherian.net>
Date: Mon Oct 4 10:16:15 2021 +0530
Don't pass numeric_only to DataArray.reduce
Tests pass!
commit b1e3ab25e85ad3df302209c22639e6af11b1d443
Author: dcherian <deepak@cherian.net>
Date: Sun Oct 3 17:37:07 2021 +0530
Raise error when reducing along indexed dimensions with squeeze=True
commit 69fd5638c45fbfe374aba6494586bd8b48aee652
Author: dcherian <deepak@cherian.net>
Date: Sun Oct 3 17:30:10 2021 +0530
Avoid forwarding DummyGroup objects
commit 58c1c6b7f6158af51553249389f6da1651c97b08
Author: dcherian <deepak@cherian.net>
Date: Sun Oct 3 16:06:57 2021 +0530
Add _dask_groupby_kwargs
commit af4cc5d44ff95e0a4aace6e867de26b1f94e63fd
Author: dcherian <deepak@cherian.net>
Date: Sun Oct 3 16:05:31 2021 +0530
Fix reduce methods
commit cdf7612b6deac9f4b1b793d2f0014507c6e289f9
Author: dcherian <deepak@cherian.net>
Date: Sun Oct 3 12:50:27 2021 +0530
Fix resample test
commit 489b2ffbc10eb62e94beee4b6fb3e2e55872d4b4
Merge: 4702c9d85 54dba584d
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date: Sun Sep 26 15:47:30 2021 -0600
Merge branch 'main' into groupby-aggs-using-numpy-groupies
commit 4702c9d85ccfd835c1e59073a9588b8a7277f8a5
Merge: e6bcce903 9be0228af
Author: dcherian <deepak@cherian.net>
Date: Tue Aug 24 12:37:14 2021 -0600
Merge branch 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray into groupby_npg
* 'groupby-aggs-using-numpy-groupies' of github.com:andersy005/xarray:
Bump actions/github-script from 4.0.2 to 4.1 (#5730)
Set coord name concat when `concat`ing along a DataArray (#5611)
Add .git-blame-ignore-revs (#5708)
Type annotate tests (#5728)
Consolidate TypeVars in a single place (#5569)
add storage_options arg to to_zarr (#5615)
dataset `__repr__` updates (#5580)
Xfail failing test on main (#5729)
Add xarray-dataclasses to ecosystem in docs (#5725)
extend show_versions (#5724)
Move docstring for xr.set_options to numpy style (#5702)
Refactor more groupby and resample tests (#5707)
Remove suggestion to install pytest-xdist in docs (#5713)
Add typing to the OPTIONS dict (#5678)
Change annotations to allow str keys (#5690)
Whatsnew for float-to-top (#5714)
Use isort's float-to-top (#5695)
Fix errors in test_latex_name_isnt_split for min environments (#5710)
Improves rendering of complex LaTeX expressions as `long_name`s when plotting (#5682)
Use same bool validator as other inputs (#5703)
commit e6bcce9033db6da748f4b89057ef165cd6fcb6f7
Author: dcherian <deepak@cherian.net>
Date: Tue Aug 24 12:35:51 2021 -0600
some fixes
commit 9be0228afe1e625c707215a6a5d29c993ebdd90b
Merge: 35944e434 a6b44d720
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date: Tue Aug 24 12:06:03 2021 -0600
Merge branch 'pydata:main' into groupby-aggs-using-numpy-groupies
commit 35944e434d30fdc9d4094248d0898ae8a249726c
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date: Fri Aug 13 15:23:09 2021 -0600
Remove `_numpy_groupies.py` module
commit f0883921adf57d5c21ddb17ff9001ba8dba99514
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date: Thu Aug 12 18:49:48 2021 -0600
Fix position keyword arguments
commit 3ee620018e7e6a742a4c6d107911196b22282332
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date: Thu Aug 12 18:47:32 2021 -0600
Remove comments
commit 511dd448de6877f8af0d1356bf16bb20d481c209
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date: Thu Aug 12 18:43:13 2021 -0600
Add more aggregations
commit ef91e6e24eb13a2974268be2c7e0479dbd219e5e
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date: Thu Aug 12 18:24:03 2021 -0600
Add _numpy_groupies module
commit c486df7720edf547e336112a376a7d444f2f8778
Author: Anderson Banihirwe <axbanihirwe@ualr.edu>
Date: Thu Aug 12 16:09:54 2021 -0600
Move `_reduce_method` classmethod to `groupby.py` module
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pre-commit run --all-fileswhats-new.rstFollowing on from #5690 & #5694, this type annotates most test files; though probably not most tests — I haven't done the huge files. They require between zero and a dozen fixes, and just ignoring assignment ignores some but not all the errors (I didn't end up using it much).
It also does useful things — fixes a bunch more annotations!