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[skip-ci] Fix groupby binary ops benchmarks #7603

Merged
merged 5 commits into from
Mar 16, 2023
Merged

[skip-ci] Fix groupby binary ops benchmarks #7603

merged 5 commits into from
Mar 16, 2023

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dcherian
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@dcherian dcherian added the run-benchmark Run the ASV benchmark workflow label Mar 10, 2023
@dcherian dcherian requested a review from Illviljan March 10, 2023 04:19
@Illviljan
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Ahh, there are a few errors in the benchmarks. Are those fixed with your other PRs?

Error: [ 88.75%] ··· ...by.ResampleDask.peakmem_groupby_binary_op_2d             failed
Error: [ 88.75%] ···· Traceback (most recent call last):
                 File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/benchmark.py", line 1293, in main_run_server
                   main_run(run_args)
                 File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/benchmark.py", line 1167, in main_run
                   result = benchmark.do_run()
                 File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/benchmark.py", line 573, in do_run
                   return self.run(*self._current_params)
                 File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/benchmark.py", line 842, in run
                   self.func(*param)
                 File "/home/runner/work/xarray/xarray/asv_bench/benchmarks/groupby.py", line 136, in peakmem_groupby_binary_op_2d
                   self.ds2d.resample(time="48H") - self.ds2d_mean
                 File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/e3a5540da3d30da735a9fb168f264be6/lib/python3.10/site-packages/xarray/core/_typed_ops.py", line 589, in __sub__
                   return self._binary_op(other, operator.sub)
                 File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/e3a5540da3d30da735a9fb168f264be6/lib/python3.10/site-packages/xarray/core/groupby.py", line 601, in _binary_op
                   raise ValueError(
               ValueError: incompatible dimensions for a grouped binary operation: the group variable '__resample_dim__' is not a dimension on the other argument
               asv: benchmark failed (exit status 1)

@dcherian
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No this is a real failure with no test coverage :(. I guess not many people do resampling binary ops?

@dcherian
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Hmmm not sure why the resample binary ops benchmarks still fail.

@Illviljan
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 Error: [ 89.17%] ··· groupby.ResampleDask.time_binary_op_1d                      failed
Error: [ 89.17%] ···· Traceback (most recent call last):
                 File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/benchmark.py", line 1293, in main_run_server
                   main_run(run_args)
                 File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/benchmark.py", line 1167, in main_run
                   result = benchmark.do_run()
                 File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/benchmark.py", line 573, in do_run
                   return self.run(*self._current_params)
                 File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/benchmark.py", line 669, in run
                   samples, number = self.benchmark_timing(timer, min_repeat, max_repeat,
                 File "/home/runner/micromamba-root/envs/xarray-tests/lib/python3.10/site-packages/asv/benchmark.py", line 705, in benchmark_timing
                   timing = timer.timeit(number)
                 File "/home/runner/work/xarray/xarray/asv_bench/.asv/env/e3a5540da3d30da735a9fb168f264be6/lib/python3.10/timeit.py", line 178, in timeit
                   timing = self.inner(it, self.timer)
                 File "<timeit-src>", line 6, in inner
                 File "/home/runner/work/xarray/xarray/asv_bench/benchmarks/groupby.py", line 127, in time_binary_op_1d
                   raise NotImplementedError
               NotImplementedError
               asv: benchmark failed (exit status 1)

Comparing to

xarray/asv_bench/benchmarks/__init__.py

Lines 72 to 74 in 5043223

"""
if os.environ.get("ASV_SKIP_SLOW", "0") == "1":
raise NotImplementedError("Skipping this test...")

It has to be initialized? Try adding a short description with why it's not implemented/link to issue.

@dcherian dcherian merged commit e7b4930 into pydata:main Mar 16, 2023
@dcherian dcherian deleted the fix-groupby-binary-op-bench branch March 16, 2023 17:08
dcherian added a commit to dcherian/xarray that referenced this pull request Mar 26, 2023
@dcherian
Merge branch 'main' into kvikio
517f195 
* main: (40 commits)
  Faq pull request (According to pull request pydata#7604 & issue pydata#1285 (pydata#7638)
  add timeouts for tests (pydata#7657)
  Pull Request Labeler - Undo workaround sync-labels bug (pydata#7667)
  [pre-commit.ci] pre-commit autoupdate (pydata#7651)
  Allow all integer dtypes in `polyval` (pydata#7619)
  [skip-ci] dev whats-new (pydata#7660)
  Redo whats-new for 2023.03.0 (pydata#7659)
  Set copy=False when calling pd.Series (pydata#7642)
  Pin pandas < 2 (pydata#7650)
  Whats-new for release 2023.03.0 (pydata#7643)
  Bump pypa/gh-action-pypi-publish from 1.7.1 to 1.8.1 (pydata#7648)
  Use more descriptive link texts (pydata#7625)
  Fix missing 'dim' argument in _get_nan_block_lengths (pydata#7598)
  Fix `pcolormesh` with str coords (pydata#7612)
  [skip-ci] Fix groupby binary ops benchmarks (pydata#7603)
  Remove incomplete sentence in IO docs (pydata#7631)
  Allow indexing unindexed dimensions using dask arrays (pydata#5873)
  Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.7.1 (pydata#7618)
  [pre-commit.ci] pre-commit autoupdate (pydata#7620)
  add a test for scatter colorbar extend (pydata#7616)
  ...
dcherian added a commit to kmsquire/xarray that referenced this pull request Mar 29, 2023
@dcherian
Merge remote-tracking branch 'upstream/main' into feature/rolling-pad
28a4ad2 
* upstream/main: (716 commits)
  Faq pull request (According to pull request pydata#7604 & issue pydata#1285 (pydata#7638)
  add timeouts for tests (pydata#7657)
  Pull Request Labeler - Undo workaround sync-labels bug (pydata#7667)
  [pre-commit.ci] pre-commit autoupdate (pydata#7651)
  Allow all integer dtypes in `polyval` (pydata#7619)
  [skip-ci] dev whats-new (pydata#7660)
  Redo whats-new for 2023.03.0 (pydata#7659)
  Set copy=False when calling pd.Series (pydata#7642)
  Pin pandas < 2 (pydata#7650)
  Whats-new for release 2023.03.0 (pydata#7643)
  Bump pypa/gh-action-pypi-publish from 1.7.1 to 1.8.1 (pydata#7648)
  Use more descriptive link texts (pydata#7625)
  Fix missing 'dim' argument in _get_nan_block_lengths (pydata#7598)
  Fix `pcolormesh` with str coords (pydata#7612)
  [skip-ci] Fix groupby binary ops benchmarks (pydata#7603)
  Remove incomplete sentence in IO docs (pydata#7631)
  Allow indexing unindexed dimensions using dask arrays (pydata#5873)
  Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.7.1 (pydata#7618)
  [pre-commit.ci] pre-commit autoupdate (pydata#7620)
  add a test for scatter colorbar extend (pydata#7616)
  ...
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@Illviljan Illviljan Illviljan approved these changes

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@dcherian @Illviljan