setup.py was removed now i can't build from source

[puririshi98]

🐛 Describe the bug

after this commit: 80d4647daf5daac4d8d6733fdddf2eae9cd9ec7a

root@45bcb33be86c:/opt/pyg/pytorch_geometric# python3 setup.py install
python3: can’t open file ‘setup.py’: [Errno 2] No such file or directory
root@45bcb33be86c:/opt/pyg/pytorch_geometric# pip install -e .
Looking in indexes: https://pypi.org/simple, https://pypi.ngc.nvidia.com
Obtaining file:///opt/pyg/pytorch_geometric
 Installing build dependencies ... done
 Getting requirements to build wheel ... done
  Preparing wheel metadata ... done
Requirement already satisfied: scipy in /usr/local/lib/python3.8/dist-packages (from torch_geometric==2.4.0) (1.6.3)
Requirement already satisfied: tqdm in /usr/local/lib/python3.8/dist-packages (from torch_geometric==2.4.0) (4.62.3)
Requirement already satisfied: requests in /usr/local/lib/python3.8/dist-packages (from torch_geometric==2.4.0) (2.28.2)
Requirement already satisfied: psutil>=5.8.0 in /usr/local/lib/python3.8/dist-packages (from torch_geometric==2.4.0) (5.8.0)
Requirement already satisfied: pyparsing in /usr/local/lib/python3.8/dist-packages (from torch_geometric==2.4.0) (3.0.9)
Requirement already satisfied: jinja2 in /usr/local/lib/python3.8/dist-packages (from torch_geometric==2.4.0) (3.1.2)
Requirement already satisfied: numpy in /usr/local/lib/python3.8/dist-packages (from torch_geometric==2.4.0) (1.22.3)
Requirement already satisfied: scikit-learn in /usr/local/lib/python3.8/dist-packages (from torch_geometric==2.4.0) (0.24.2)
Requirement already satisfied: MarkupSafe>=2.0 in /usr/local/lib/python3.8/dist-packages (from jinja2->torch_geometric==2.4.0) (2.1.2)
Requirement already satisfied: idna<4,>=2.5 in /usr/local/lib/python3.8/dist-packages (from requests->torch_geometric==2.4.0) (3.4)
Requirement already satisfied: charset-normalizer<4,>=2 in /usr/local/lib/python3.8/dist-packages (from requests->torch_geometric==2.4.0) (3.1.0)
Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.8/dist-packages (from requests->torch_geometric==2.4.0) (2022.12.7)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /usr/local/lib/python3.8/dist-packages (from requests->torch_geometric==2.4.0) (1.26.14)
Requirement already satisfied: joblib>=0.11 in /usr/local/lib/python3.8/dist-packages (from scikit-learn->torch_geometric==2.4.0) (1.2.0)
Requirement already satisfied: threadpoolctl>=2.0.0 in /usr/local/lib/python3.8/dist-packages (from scikit-learn->torch_geometric==2.4.0) (3.1.0)
Installing collected packages: torch-geometric
 Running setup.py develop for torch-geometric
  ERROR: Command errored out with exit status 1:
   command: /usr/bin/python -c ‘import io, os, sys, setuptools, tokenize; sys.argv[0] = ‘“’”‘/opt/pyg/pytorch_geometric/setup.py’“‘”’; __file__=‘“’”‘/opt/pyg/pytorch_geometric/setup.py’“‘”’;f = getattr(tokenize, ‘“’”‘open’“‘”’, open)(__file__) if os.path.exists(__file__) else io.StringIO(‘“’”‘from setuptools import setup; setup()‘“’”‘);code = f.read().replace(‘“’”‘\r\n’“‘”’, ‘“’”‘\n’“‘”’);f.close();exec(compile(code, __file__, ‘“’”‘exec’“‘”’))' develop --no-deps
     cwd: /opt/pyg/pytorch_geometric/
  Complete output (14 lines):
  error: Multiple top-level packages discovered in a flat-layout: [‘conda’, ‘docker’, ‘graphgym’, ‘torch_geometric’].
   
  To avoid accidental inclusion of unwanted files or directories,
  setuptools will not proceed with this build.
   
  If you are trying to create a single distribution with multiple packages
  on purpose, you should not rely on automatic discovery.
  Instead, consider the following options:
   
  1. set up custom discovery (`find` directive with `include` or `exclude`)
  2. use a `src-layout`
  3. explicitly set `py_modules` or `packages` with a list of names
   
  To find more information, look for “package discovery” on setuptools docs.
  ----------------------------------------
ERROR: Command errored out with exit status 1: /usr/bin/python -c ‘import io, os, sys, setuptools, tokenize; sys.argv[0] = ‘“’”‘/opt/pyg/pytorch_geometric/setup.py’“‘”’; __file__=‘“’”‘/opt/pyg/pytorch_geometric/setup.py’“‘”’;f = getattr(tokenize, ‘“’”‘open’“‘”’, open)(__file__) if os.path.exists(__file__) else io.StringIO(‘“’”‘from setuptools import setup; setup()‘“’”‘);code = f.read().replace(‘“’”‘\r\n’“‘”’, ‘“’”‘\n’“‘”’);f.close();exec(compile(code, __file__, ‘“’”‘exec’“‘”’))' develop --no-deps Check the logs for full command output.

Environment

• PyG version: master

[rusty1s]

We no longer support the deprecated installation command python setup.py install. You have to use pip install . instead.