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Bump numpy from 1.23.5 to 1.24.1 #119

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@dependabot dependabot bot commented on behalf of github Dec 26, 2022

Bumps numpy from 1.23.5 to 1.24.1.

Release notes

Sourced from numpy's releases.

v1.24.1

NumPy 1.24.1 Release Notes

NumPy 1.24.1 is a maintenance release that fixes bugs and regressions discovered after the 1.24.0 release. The Python versions supported by this release are 3.8-3.11.

Contributors

A total of 12 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Andrew Nelson
  • Ben Greiner +
  • Charles Harris
  • Clément Robert
  • Matteo Raso
  • Matti Picus
  • Melissa Weber Mendonça
  • Miles Cranmer
  • Ralf Gommers
  • Rohit Goswami
  • Sayed Adel
  • Sebastian Berg

Pull requests merged

A total of 18 pull requests were merged for this release.

  • #22820: BLD: add workaround in setup.py for newer setuptools
  • #22830: BLD: CIRRUS_TAG redux
  • #22831: DOC: fix a couple typos in 1.23 notes
  • #22832: BUG: Fix refcounting errors found using pytest-leaks
  • #22834: BUG, SIMD: Fix invalid value encountered in several ufuncs
  • #22837: TST: ignore more np.distutils.log imports
  • #22839: BUG: Do not use getdata() in np.ma.masked_invalid
  • #22847: BUG: Ensure correct behavior for rows ending in delimiter in...
  • #22848: BUG, SIMD: Fix the bitmask of the boolean comparison
  • #22857: BLD: Help raspian arm + clang 13 about __builtin_mul_overflow
  • #22858: API: Ensure a full mask is returned for masked_invalid
  • #22866: BUG: Polynomials now copy properly (#22669)
  • #22867: BUG, SIMD: Fix memory overlap in ufunc comparison loops
  • #22868: BUG: Fortify string casts against floating point warnings
  • #22875: TST: Ignore nan-warnings in randomized out tests
  • #22883: MAINT: restore npymath implementations needed for freebsd
  • #22884: BUG: Fix integer overflow in in1d for mixed integer dtypes #22877
  • #22887: BUG: Use whole file for encoding checks with charset_normalizer.

Checksums

... (truncated)

Commits
  • a28f4f2 Merge pull request #22888 from charris/prepare-1.24.1-release
  • f8fea39 REL: Prepare for the NumPY 1.24.1 release.
  • 6f491e0 Merge pull request #22887 from charris/backport-22872
  • 48f5fe4 BUG: Use whole file for encoding checks with charset_normalizer [f2py] (#22...
  • 0f3484a Merge pull request #22883 from charris/backport-22882
  • 002c60d Merge pull request #22884 from charris/backport-22878
  • 38ef9ce BUG: Fix integer overflow in in1d for mixed integer dtypes #22877 (#22878)
  • bb00c68 MAINT: restore npymath implementations needed for freebsd
  • 64e09c3 Merge pull request #22875 from charris/backport-22869
  • dc7bac6 TST: Ignore nan-warnings in randomized out tests
  • Additional commits viewable in compare view

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@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Dec 26, 2022
@jan-janssen jan-janssen closed this Jan 2, 2023
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dependabot bot commented on behalf of github Jan 2, 2023

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version. You can also ignore all major, minor, or patch releases for a dependency by adding an ignore condition with the desired update_types to your config file.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.

@jan-janssen jan-janssen reopened this Jan 2, 2023
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======================================================================
[167](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:168)
ERROR: test_run_sp_complete (yaff_module.test_yaff.TestYaff)
[168](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:169)
----------------------------------------------------------------------
[169](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:170)
Traceback (most recent call last):
[170](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:171)
  File "/home/runner/work/pyiron_gpl/pyiron_gpl/tests/yaff_module/test_yaff.py", line 227, in test_run_sp_complete
[171](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:172)
    self.job_complete.run(run_mode="manual")
[172](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:173)
  File "/usr/share/miniconda/envs/test/lib/python3.10/site-packages/pyiron_base/utils/deprecate.py", line 171, in decorated
[173](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:174)
    return function(*args, **kwargs)
[174](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:175)
  File "/usr/share/miniconda/envs/test/lib/python3.10/site-packages/pyiron_base/jobs/job/generic.py", line 704, in run
[175](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:176)
    self._run_if_new(debug=debug)
[176](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:177)
  File "/usr/share/miniconda/envs/test/lib/python3.10/site-packages/pyiron_base/jobs/job/generic.py", line 1238, in _run_if_new
[177](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:178)
    run_job_with_status_initialized(job=self, debug=debug)
[178](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:179)
  File "/usr/share/miniconda/envs/test/lib/python3.10/site-packages/pyiron_base/jobs/job/runfunction.py", line 75, in run_job_with_status_initialized
[179](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:180)
    job.save()
[180](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:181)
  File "/usr/share/miniconda/envs/test/lib/python3.10/site-packages/pyiron_base/jobs/job/generic.py", line 1111, in save
[181](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:182)
    self.write_input()
[182](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:183)
  File "/home/runner/work/pyiron_gpl/pyiron_gpl/pyiron_gpl/yaff/yaff.py", line 676, in write_input
[183](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:184)
    write_chk(input_dict, working_directory=self.working_directory)
[184](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:185)
  File "/home/runner/work/pyiron_gpl/pyiron_gpl/pyiron_gpl/yaff/yaff.py", line 38, in write_chk
[185](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:186)
    system.to_file(posixpath.join(working_directory,'system.chk'))
[186](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:187)
  File "/usr/share/miniconda/envs/test/lib/python3.10/site-packages/yaff/system.py", line 520, in to_file
[187](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:188)
    dump_chk(fn, {
[188](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:189)
  File "/usr/share/miniconda/envs/test/lib/python3.10/site-packages/molmod/io/chk.py", line 144, in dump_chk
[189](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:190)
    if issubclass(value.dtype.type, (str, np.unicode, np.bytes_)):
[190](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:191)
  File "/usr/share/miniconda/envs/test/lib/python3.10/site-packages/numpy/__init__.py", line 284, in __getattr__
[191](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:192)
    raise AttributeError("module {!r} has no attribute "
[192](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:193)
AttributeError: module 'numpy' has no attribute 'unicode'
[193](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:194)

[194](https://github.com/pyiron/pyiron_gpl/actions/runs/3821797077/jobs/6501303304#step:5:195)
----------------------------------------------------------------------

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@dependabot rebase

@dependabot dependabot bot force-pushed the dependabot/pip/numpy-1.24.1 branch from 593f9bf to cb19065 Compare January 4, 2023 14:02
Bumps [numpy](https://github.com/numpy/numpy) from 1.23.5 to 1.24.1.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v1.23.5...v1.24.1)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot force-pushed the dependabot/pip/numpy-1.24.1 branch from af284a4 to 840d66f Compare January 9, 2023 19:46
@jan-janssen jan-janssen merged commit a635d55 into main Jan 11, 2023
@delete-merged-branch delete-merged-branch bot deleted the dependabot/pip/numpy-1.24.1 branch January 11, 2023 03:01
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