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added mapping functionalities that allow to use the pyrates-based names for variables and parameters in the model rather than the auto naming style
implemented the changes with the ODESystem.run and ODESystem.extract methods
dataframes return by ODESystem.run now contain the pyrates-like variable names in the column header
ODESystem.__init__ now takes a couple of new arguments: The "eq_file" is a positional argument that ties an ODESystem instance to a single fortran equation file. "params" and "state_vars" allow to provide the parameter and state variable names that can be used instead of the indexing style of auto.
the parameter and state-variable names that can be provided to the ODESystem.__init__ method can be directly obtained from the CircuitTemplate.get_run_func that is also used by the ODESystem.from_yaml method.