Merge pull request #247 from jGaboardi/update_joss_ref_etc

cleaning up JOSS manuscript -- references & links
pysal · Jun 12, 2022 · e258eda · e258eda
2 parents f0cf476 + c5f6efc
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diff --git a/paper/paper.bib b/paper/paper.bib
@@ -1,6 +1,6 @@
 @article{assunccao2006efficient,
   title={Efficient Regionalization Techniques for Socio-economic Geographical Units Using Minimum Spanning Trees},
-  author={Assun{\c{c}}{\~a}o, Renato M and Neves, Marcos Corr{\^e}a and C{\^a}mara, Gilberto and da Costa Freitas, Corina},
+  author={Assun{\c{c}}{\~a}o, Renato M. and Neves, Marcos Corr{\^e}a and C{\^a}mara, Gilberto and da Costa Freitas, Corina},
   journal={International Journal of Geographical Information Science},
   volume={20},
   number={7},
@@ -26,7 +26,7 @@ @article{duque2012max
 
 @article{koopmans1949optimum,
   title={Optimum utilization of the transportation system},
-  author={Koopmans, Tjalling C},
+  author={Koopmans, Tjalling C.},
   journal={Econometrica: Journal of the Econometric Society},
   pages={136--146},
   year={1949},
@@ -36,7 +36,7 @@ @article{koopmans1949optimum
 
 @article{miller1960integer,
   title={Integer programming formulation of traveling salesman problems},
-  author={Miller, Clair E and Tucker, Albert W and Zemlin, Richard A},
+  author={Miller, Clair E. and Tucker, Albert W. and Zemlin, Richard A.},
   journal={Journal of the ACM (JACM)},
   volume={7},
   number={4},
@@ -59,7 +59,7 @@ @article{murray2021contemporary
 
 @article{wei2020efficient,
   title={Efficient Regionalization for Spatially Explicit Neighborhood Delineation},
-  author={Wei, Ran and Rey, Sergio and Knaap, Elijah},
+  author={Wei, Ran and Rey, Sergio J. and Knaap, Elijah},
   journal={International Journal of Geographical Information Science},
   pages={1--17},
   year={2020},
@@ -90,20 +90,21 @@ @article{openshaw1995algorithms
 }
 
 @article{pysal2007,
-  author={Sergio Rey and Luc Anselin},
+  author={Sergio J. Rey and Luc Anselin},
   title={{PySAL: A Python Library of Spatial Analytical Methods}},
   journal={The Review of Regional Studies},
   year=2007,
   volume={37},
   number={1},
   pages={5-27},
   keywords={Open Source; Software; Spatial},
+  doi={10.52324/001c.8285},
   url={https://rrs.scholasticahq.com/article/8285.pdf}
 }
 
 @article{rey2015open,
   title={Open geospatial analytics with PySAL},
-  author={Rey, Sergio J and Anselin, Luc and Li, Xun and Pahle, Robert and Laura, Jason and Li, Wenwen and Koschinsky, Julia},
+  author={Rey, Sergio J. and Anselin, Luc and Li, Xun and Pahle, Robert and Laura, Jason and Li, Wenwen and Koschinsky, Julia},
   journal={ISPRS International Journal of Geo-Information},
   volume={4},
   number={2},
@@ -124,13 +125,13 @@ @article{Rey2021
 
 @article{wolf2020,
   title={Spatially-encouraged spectral clustering: a technique for blending map typologies and regionalization},
-  author={Wolf, Levi},
+  author={Wolf, Levi J.},
   url= {https://osf.io/yzt2p/},
   doi={10.31219/osf.io/yzt2p}
 }
 
 @article{Toregas1971,
-  author={Toregas, Constantine and Swain, R. and ReVelle, C. S. and Bergman, L.},
+  author={Toregas, Constantine and Swain, R.W. and ReVelle, C.S. and Bergman, L.},
   doi={10.1287/opre.19.6.1363},
   journal={Operations Research},
   number={6},
@@ -151,13 +152,14 @@ @article{Church1974
 }
 
 @article{ReVelle1970,
-  author={ReVelle, C. S. and Swain, R.W.},
+  author={ReVelle, C.S. and Swain, R.W.},
   journal={Geographical Analysis},
   number={1},
   pages={30--42},
   title={{Central Facilities Location}},
   volume={2},
-  year={1970}
+  year={1970},
+  doi={10.1111/j.1538-4632.1970.tb00142.x}
 }
 
 @article{Hakimi1964,
@@ -180,4 +182,131 @@ @misc{spopt2021
     url       = {https://github.com/pysal/spopt},
     doi       = {10.5281/zenodo.4444156},
     keywords  = {python,regionalization,spatial-optimization,location-modeling}
-}
+}
+
+@article{mitchell2011pulp,
+  title={{PuLP: A Linear Programming Toolkit for Python}},
+  author={Mitchell, Stuart and OSullivan, Michael and Dunning, Iain},
+  journal={The University of Auckland, Auckland, New Zealand},
+  volume={65},
+  year={2011}
+}
+
+@article{badr2015tool,
+  title={A tool for hierarchical climate regionalization},
+  author={Badr, Hamada S. and Zaitchik, Benjamin F. and Dezfuli, Amin K.},
+  journal={Earth Science Informatics},
+  volume={8},
+  number={4},
+  pages={949--958},
+  year={2015},
+  publisher={Springer},
+  doi={https://doi.org/10.1007/s12145-015-0221-7}
+}
+
+@article{LEMUSCANOVAS2019114,
+    title = {synoptReg: An R package for computing a synoptic climate classification and a spatial regionalization of environmental data},
+    journal = {Environmental Modelling \& Software},
+    volume = {118},
+    pages = {114--119},
+    year = {2019},
+    issn = {1364-8152},
+    doi = {https://doi.org/10.1016/j.envsoft.2019.04.006},
+    url = {https://www.sciencedirect.com/science/article/pii/S1364815219300064},
+    author = {Marc Lemus-Canovas and Joan A. Lopez-Bustins and Javier Martin-Vide and Dominic Royé},
+    keywords = {Alps, Environmental regionalization, R package, synoptReg, Synoptic classification},
+}
+
+@article{Chen2021,
+    title = {{Open-Source Approaches for Location Cover Models: Capabilities and Efficiency}},
+    journal = {Journal of Geographical Systems},
+    volume = {23},
+    pages = {361--380},
+    year = {2021},
+    issn = {1435-5949},
+    doi = {10.1007/s10109-021-00350-w},
+    author = {Chen, Huanfa and Murray, Alan T. and Jiang, Rui},
+}
+
+@article{daru2020phyloregion,
+  title={{phyloregion: R package for biogeographical regionalization and macroecology}},
+  author={Daru, Barnabas H. and Karunarathne, Piyal and Schliep, Klaus},
+  journal={Methods in Ecology and Evolution},
+  volume={11},
+  number={11},
+  pages={1483--1491},
+  year={2020},
+  doi={10.1111/2041-210X.13478}
+}
+
+@article{regioneR2015,
+    author = {Gel, Bernat and Díez-Villanueva, Anna and Serra, Eduard and Buschbeck, Marcus and Peinado, Miguel A. and Malinverni, Roberto},
+    title = {{regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests}},
+    journal = {Bioinformatics},
+    volume = {32},
+    number = {2},
+    pages = {289--291},
+    year = {2015},
+    month = {09},
+    issn = {1367-4803},
+    doi = {10.1093/bioinformatics/btv562},
+}
+
+@misc{nsRFA,
+    author    = {Viglione, A.},
+    year      = {2009},
+    title     = {{nsRFA: Non-supervised Regional Frequency Analysis}},
+    url       = {http://www.CRAN.R-project.org/package=nsRFA},
+    howpublished       = {\url{http://www.CRAN.R-project.org/package=nsRFA}},
+}
+
+@Manual{rgeoda,
+  title = {rgeoda: R Library for Spatial Data Analysis},
+  author = {Xun Li and Luc Anselin},
+  year = {2022},
+  note = {\url{https://github.com/geodacenter/rgeoda/}, \url{https://geodacenter.github.io/rgeoda/}},
+}
+
+@article{rahman2018sdpt3r,
+    author = {Rahman, Adam},
+    year = {2019},
+    month = {01},
+    pages = {371},
+    title = {{sdpt3r: Semidefinite Quadratic Linear Programming in R}},
+    volume = {10},
+    journal = {The R Journal},
+    doi = {10.32614/RJ-2018-063}
+}
+
+@misc{RBGL,
+    author    = {Carey, V. and Long, L. and Gentleman, R.},
+    year      = {2022},
+    title     = {{RBGL: An interface to the BOOST graph library}},
+    url       = {https://www.bioconductor.org/packages/release/bioc/html/RBGL.html},
+    howpublished       = {\url{https://www.bioconductor.org/packages/release/bioc/html/RBGL.html}},
+}
+
+@misc{pyspatialopt,
+    author    = {Pulver, Aaron},
+    year      = {2016},
+    title     = {{pyspatialopt: A library to create, solve, and analyze spatial optimization problems}},
+    url       = {https://github.com/apulverizer/pyspatialopt},
+    howpublished       = {\url{https://github.com/apulverizer/pyspatialopt}},
+}
+
+@misc{allagash,
+    author    = {Pulver, Aaron},
+    year      = {2019},
+    title     = {{allagash: A spatial optmization library for covering problems}},
+    url       = {https://github.com/apulverizer/allagash},
+    howpublished       = {\url{https://github.com/apulverizer/allagash}},
+}
+
+@misc{maxcovr,
+    author    = {Tierney, N.},
+    year      = {2019},
+    title     = {{maxcovr: A Set of Tools for Solving the Maximal Covering Location Problem}},
+    url       = {https://github.com/njtierney/maxcovr},
+    howpublished       = {\url{https://github.com/njtierney/maxcovr}},
+}
+