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cleaning up JOSS manuscript -- references & links #247

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Jun 12, 2022
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cleaning up JOSS manuscript -- references & links #247

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acd0e77
adding missing dois
jGaboardi Jun 11, 2022
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address reference concerns
jGaboardi Jun 12, 2022
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151 changes: 140 additions & 11 deletions paper/paper.bib
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
@article{assunccao2006efficient,
title={Efficient Regionalization Techniques for Socio-economic Geographical Units Using Minimum Spanning Trees},
author={Assun{\c{c}}{\~a}o, Renato M and Neves, Marcos Corr{\^e}a and C{\^a}mara, Gilberto and da Costa Freitas, Corina},
author={Assun{\c{c}}{\~a}o, Renato M. and Neves, Marcos Corr{\^e}a and C{\^a}mara, Gilberto and da Costa Freitas, Corina},
journal={International Journal of Geographical Information Science},
volume={20},
number={7},
Expand All @@ -26,7 +26,7 @@ @article{duque2012max

@article{koopmans1949optimum,
title={Optimum utilization of the transportation system},
author={Koopmans, Tjalling C},
author={Koopmans, Tjalling C.},
journal={Econometrica: Journal of the Econometric Society},
pages={136--146},
year={1949},
Expand All @@ -36,7 +36,7 @@ @article{koopmans1949optimum

@article{miller1960integer,
title={Integer programming formulation of traveling salesman problems},
author={Miller, Clair E and Tucker, Albert W and Zemlin, Richard A},
author={Miller, Clair E. and Tucker, Albert W. and Zemlin, Richard A.},
journal={Journal of the ACM (JACM)},
volume={7},
number={4},
Expand All @@ -59,7 +59,7 @@ @article{murray2021contemporary

@article{wei2020efficient,
title={Efficient Regionalization for Spatially Explicit Neighborhood Delineation},
author={Wei, Ran and Rey, Sergio and Knaap, Elijah},
author={Wei, Ran and Rey, Sergio J. and Knaap, Elijah},
journal={International Journal of Geographical Information Science},
pages={1--17},
year={2020},
Expand Down Expand Up @@ -90,20 +90,21 @@ @article{openshaw1995algorithms
}

@article{pysal2007,
author={Sergio Rey and Luc Anselin},
author={Sergio J. Rey and Luc Anselin},
title={{PySAL: A Python Library of Spatial Analytical Methods}},
journal={The Review of Regional Studies},
year=2007,
volume={37},
number={1},
pages={5-27},
keywords={Open Source; Software; Spatial},
doi={10.52324/001c.8285},
url={https://rrs.scholasticahq.com/article/8285.pdf}
}

@article{rey2015open,
title={Open geospatial analytics with PySAL},
author={Rey, Sergio J and Anselin, Luc and Li, Xun and Pahle, Robert and Laura, Jason and Li, Wenwen and Koschinsky, Julia},
author={Rey, Sergio J. and Anselin, Luc and Li, Xun and Pahle, Robert and Laura, Jason and Li, Wenwen and Koschinsky, Julia},
journal={ISPRS International Journal of Geo-Information},
volume={4},
number={2},
Expand All @@ -124,13 +125,13 @@ @article{Rey2021

@article{wolf2020,
title={Spatially-encouraged spectral clustering: a technique for blending map typologies and regionalization},
author={Wolf, Levi},
author={Wolf, Levi J.},
url= {https://osf.io/yzt2p/},
doi={10.31219/osf.io/yzt2p}
}

@article{Toregas1971,
author={Toregas, Constantine and Swain, R. and ReVelle, C. S. and Bergman, L.},
author={Toregas, Constantine and Swain, R.W. and ReVelle, C.S. and Bergman, L.},
doi={10.1287/opre.19.6.1363},
journal={Operations Research},
number={6},
Expand All @@ -151,13 +152,14 @@ @article{Church1974
}

@article{ReVelle1970,
author={ReVelle, C. S. and Swain, R.W.},
author={ReVelle, C.S. and Swain, R.W.},
journal={Geographical Analysis},
number={1},
pages={30--42},
title={{Central Facilities Location}},
volume={2},
year={1970}
year={1970},
doi={10.1111/j.1538-4632.1970.tb00142.x}
}

@article{Hakimi1964,
Expand All @@ -180,4 +182,131 @@ @misc{spopt2021
url = {https://github.com/pysal/spopt},
doi = {10.5281/zenodo.4444156},
keywords = {python,regionalization,spatial-optimization,location-modeling}
}
}

@article{mitchell2011pulp,
title={{PuLP: A Linear Programming Toolkit for Python}},
author={Mitchell, Stuart and OSullivan, Michael and Dunning, Iain},
journal={The University of Auckland, Auckland, New Zealand},
volume={65},
year={2011}
}

@article{badr2015tool,
title={A tool for hierarchical climate regionalization},
author={Badr, Hamada S. and Zaitchik, Benjamin F. and Dezfuli, Amin K.},
journal={Earth Science Informatics},
volume={8},
number={4},
pages={949--958},
year={2015},
publisher={Springer},
doi={https://doi.org/10.1007/s12145-015-0221-7}
}

@article{LEMUSCANOVAS2019114,
title = {synoptReg: An R package for computing a synoptic climate classification and a spatial regionalization of environmental data},
journal = {Environmental Modelling \& Software},
volume = {118},
pages = {114--119},
year = {2019},
issn = {1364-8152},
doi = {https://doi.org/10.1016/j.envsoft.2019.04.006},
url = {https://www.sciencedirect.com/science/article/pii/S1364815219300064},
author = {Marc Lemus-Canovas and Joan A. Lopez-Bustins and Javier Martin-Vide and Dominic Royé},
keywords = {Alps, Environmental regionalization, R package, synoptReg, Synoptic classification},
}

@article{Chen2021,
title = {{Open-Source Approaches for Location Cover Models: Capabilities and Efficiency}},
journal = {Journal of Geographical Systems},
volume = {23},
pages = {361--380},
year = {2021},
issn = {1435-5949},
doi = {10.1007/s10109-021-00350-w},
author = {Chen, Huanfa and Murray, Alan T. and Jiang, Rui},
}

@article{daru2020phyloregion,
title={{phyloregion: R package for biogeographical regionalization and macroecology}},
author={Daru, Barnabas H. and Karunarathne, Piyal and Schliep, Klaus},
journal={Methods in Ecology and Evolution},
volume={11},
number={11},
pages={1483--1491},
year={2020},
doi={10.1111/2041-210X.13478}
}

@article{regioneR2015,
author = {Gel, Bernat and Díez-Villanueva, Anna and Serra, Eduard and Buschbeck, Marcus and Peinado, Miguel A. and Malinverni, Roberto},
title = {{regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests}},
journal = {Bioinformatics},
volume = {32},
number = {2},
pages = {289--291},
year = {2015},
month = {09},
issn = {1367-4803},
doi = {10.1093/bioinformatics/btv562},
}

@misc{nsRFA,
author = {Viglione, A.},
year = {2009},
title = {{nsRFA: Non-supervised Regional Frequency Analysis}},
url = {http://www.CRAN.R-project.org/package=nsRFA},
howpublished = {\url{http://www.CRAN.R-project.org/package=nsRFA}},
}

@Manual{rgeoda,
title = {rgeoda: R Library for Spatial Data Analysis},
author = {Xun Li and Luc Anselin},
year = {2022},
note = {\url{https://github.com/geodacenter/rgeoda/}, \url{https://geodacenter.github.io/rgeoda/}},
}

@article{rahman2018sdpt3r,
author = {Rahman, Adam},
year = {2019},
month = {01},
pages = {371},
title = {{sdpt3r: Semidefinite Quadratic Linear Programming in R}},
volume = {10},
journal = {The R Journal},
doi = {10.32614/RJ-2018-063}
}

@misc{RBGL,
author = {Carey, V. and Long, L. and Gentleman, R.},
year = {2022},
title = {{RBGL: An interface to the BOOST graph library}},
url = {https://www.bioconductor.org/packages/release/bioc/html/RBGL.html},
howpublished = {\url{https://www.bioconductor.org/packages/release/bioc/html/RBGL.html}},
}

@misc{pyspatialopt,
author = {Pulver, Aaron},
year = {2016},
title = {{pyspatialopt: A library to create, solve, and analyze spatial optimization problems}},
url = {https://github.com/apulverizer/pyspatialopt},
howpublished = {\url{https://github.com/apulverizer/pyspatialopt}},
}

@misc{allagash,
author = {Pulver, Aaron},
year = {2019},
title = {{allagash: A spatial optmization library for covering problems}},
url = {https://github.com/apulverizer/allagash},
howpublished = {\url{https://github.com/apulverizer/allagash}},
}

@misc{maxcovr,
author = {Tierney, N.},
year = {2019},
title = {{maxcovr: A Set of Tools for Solving the Maximal Covering Location Problem}},
url = {https://github.com/njtierney/maxcovr},
howpublished = {\url{https://github.com/njtierney/maxcovr}},
}

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