Don't ignore errors in files passed on the command line (#14060)

#13768 had a bug so that errors were sometimes silenced in files that
were under a directory in `sys.path`. `sys.path` sometimes includes the 
current working directory, resulting in no errors reported at all. Fix it by 
always reporting errors if a file was passed on the command line (unless
*explicitly* silenced).

When using import following errors can still be ignored, which is 
questionable, but this didn't change recently so I'm not addressing it 
here.

Fixes #14042.

mypy/build.py

@@ -1940,7 +1940,7 @@ def __init__(
                 raise
             if follow_imports == "silent":
                 self.ignore_all = True
-        elif path and is_silent_import_module(manager, path):
+        elif path and is_silent_import_module(manager, path) and not root_source:
             self.ignore_all = True
         self.path = path
         if path:
@@ -2629,7 +2629,7 @@ def find_module_and_diagnose(
                 else:
                     skipping_module(manager, caller_line, caller_state, id, result)
             raise ModuleNotFound
-        if is_silent_import_module(manager, result):
+        if is_silent_import_module(manager, result) and not root_source:
             follow_imports = "silent"
         return (result, follow_imports)
     else:
@@ -3024,7 +3024,11 @@ def load_graph(
     for bs in sources:
         try:
             st = State(
-                id=bs.module, path=bs.path, source=bs.text, manager=manager, root_source=True
+                id=bs.module,
+                path=bs.path,
+                source=bs.text,
+                manager=manager,
+                root_source=not bs.followed,
             )
         except ModuleNotFound:
             continue

mypy/dmypy_server.py

@@ -592,7 +592,7 @@ def fine_grained_increment_follow_imports(self, sources: list[BuildSource]) -> l
         sources.extend(new_files)
 
         # Process changes directly reachable from roots.
-        messages = fine_grained_manager.update(changed, [])
+        messages = fine_grained_manager.update(changed, [], followed=True)
 
         # Follow deps from changed modules (still within graph).
         worklist = changed[:]
@@ -609,13 +609,13 @@ def fine_grained_increment_follow_imports(self, sources: list[BuildSource]) -> l
                 sources2, graph, seen, changed_paths
             )
             self.update_sources(new_files)
-            messages = fine_grained_manager.update(changed, [])
+            messages = fine_grained_manager.update(changed, [], followed=True)
             worklist.extend(changed)
 
         t2 = time.time()
 
         def refresh_file(module: str, path: str) -> list[str]:
-            return fine_grained_manager.update([(module, path)], [])
+            return fine_grained_manager.update([(module, path)], [], followed=True)
 
         for module_id, state in list(graph.items()):
             new_messages = refresh_suppressed_submodules(
@@ -632,10 +632,10 @@ def refresh_file(module: str, path: str) -> list[str]:
             new_unsuppressed = self.find_added_suppressed(graph, seen, manager.search_paths)
             if not new_unsuppressed:
                 break
-            new_files = [BuildSource(mod[1], mod[0]) for mod in new_unsuppressed]
+            new_files = [BuildSource(mod[1], mod[0], followed=True) for mod in new_unsuppressed]
             sources.extend(new_files)
             self.update_sources(new_files)
-            messages = fine_grained_manager.update(new_unsuppressed, [])
+            messages = fine_grained_manager.update(new_unsuppressed, [], followed=True)
 
             for module_id, path in new_unsuppressed:
                 new_messages = refresh_suppressed_submodules(
@@ -717,15 +717,15 @@ def find_reachable_changed_modules(
                 for dep in state.dependencies:
                     if dep not in seen:
                         seen.add(dep)
-                        worklist.append(BuildSource(graph[dep].path, graph[dep].id))
+                        worklist.append(BuildSource(graph[dep].path, graph[dep].id, followed=True))
         return changed, new_files
 
     def direct_imports(
         self, module: tuple[str, str], graph: mypy.build.Graph
     ) -> list[BuildSource]:
         """Return the direct imports of module not included in seen."""
         state = graph[module[0]]
-        return [BuildSource(graph[dep].path, dep) for dep in state.dependencies]
+        return [BuildSource(graph[dep].path, dep, followed=True) for dep in state.dependencies]
 
     def find_added_suppressed(
         self, graph: mypy.build.Graph, seen: set[str], search_paths: SearchPaths

mypy/modulefinder.py

@@ -115,15 +115,19 @@ def __init__(
         module: str | None,
         text: str | None = None,
         base_dir: str | None = None,
+        followed: bool = False,
     ) -> None:
         self.path = path  # File where it's found (e.g. 'xxx/yyy/foo/bar.py')
         self.module = module or "__main__"  # Module name (e.g. 'foo.bar')
         self.text = text  # Source code, if initially supplied, else None
         self.base_dir = base_dir  # Directory where the package is rooted (e.g. 'xxx/yyy')
+        self.followed = followed  # Was this found by following imports?
 
     def __repr__(self) -> str:
-        return "BuildSource(path={!r}, module={!r}, has_text={}, base_dir={!r})".format(
-            self.path, self.module, self.text is not None, self.base_dir
+        return (
+            "BuildSource(path={!r}, module={!r}, has_text={}, base_dir={!r}, followed={})".format(
+                self.path, self.module, self.text is not None, self.base_dir, self.followed
+            )
         )
 
 

mypy/server/update.py

@@ -203,7 +203,10 @@ def __init__(self, result: BuildResult) -> None:
         self.processed_targets: list[str] = []
 
     def update(
-        self, changed_modules: list[tuple[str, str]], removed_modules: list[tuple[str, str]]
+        self,
+        changed_modules: list[tuple[str, str]],
+        removed_modules: list[tuple[str, str]],
+        followed: bool = False,
     ) -> list[str]:
         """Update previous build result by processing changed modules.
 
@@ -219,6 +222,7 @@ def update(
                 Assume this is correct; it's not validated here.
             removed_modules: Modules that have been deleted since the previous update
                 or removed from the build.
+            followed: If True, the modules were found through following imports
 
         Returns:
             A list of errors.
@@ -256,7 +260,9 @@ def update(
             self.blocking_error = None
 
         while True:
-            result = self.update_one(changed_modules, initial_set, removed_set, blocking_error)
+            result = self.update_one(
+                changed_modules, initial_set, removed_set, blocking_error, followed
+            )
             changed_modules, (next_id, next_path), blocker_messages = result
 
             if blocker_messages is not None:
@@ -329,6 +335,7 @@ def update_one(
         initial_set: set[str],
         removed_set: set[str],
         blocking_error: str | None,
+        followed: bool,
     ) -> tuple[list[tuple[str, str]], tuple[str, str], list[str] | None]:
         """Process a module from the list of changed modules.
 
@@ -355,7 +362,7 @@ def update_one(
             )
             return changed_modules, (next_id, next_path), None
 
-        result = self.update_module(next_id, next_path, next_id in removed_set)
+        result = self.update_module(next_id, next_path, next_id in removed_set, followed)
         remaining, (next_id, next_path), blocker_messages = result
         changed_modules = [(id, path) for id, path in changed_modules if id != next_id]
         changed_modules = dedupe_modules(remaining + changed_modules)
@@ -368,7 +375,7 @@ def update_one(
         return changed_modules, (next_id, next_path), blocker_messages
 
     def update_module(
-        self, module: str, path: str, force_removed: bool
+        self, module: str, path: str, force_removed: bool, followed: bool
     ) -> tuple[list[tuple[str, str]], tuple[str, str], list[str] | None]:
         """Update a single modified module.
 
@@ -380,6 +387,7 @@ def update_module(
             path: File system path of the module
             force_removed: If True, consider module removed from the build even if path
                 exists (used for removing an existing file from the build)
+            followed: Was this found via import following?
 
         Returns:
             Tuple with these items:
@@ -417,7 +425,7 @@ def update_module(
         manager.errors.reset()
         self.processed_targets.append(module)
         result = update_module_isolated(
-            module, path, manager, previous_modules, graph, force_removed
+            module, path, manager, previous_modules, graph, force_removed, followed
         )
         if isinstance(result, BlockedUpdate):
             # Blocking error -- just give up
@@ -552,6 +560,7 @@ def update_module_isolated(
     previous_modules: dict[str, str],
     graph: Graph,
     force_removed: bool,
+    followed: bool,
 ) -> UpdateResult:
     """Build a new version of one changed module only.
 
@@ -575,7 +584,7 @@ def update_module_isolated(
         delete_module(module, path, graph, manager)
         return NormalUpdate(module, path, [], None)
 
-    sources = get_sources(manager.fscache, previous_modules, [(module, path)])
+    sources = get_sources(manager.fscache, previous_modules, [(module, path)], followed)
 
     if module in manager.missing_modules:
         manager.missing_modules.remove(module)
@@ -728,12 +737,15 @@ def get_module_to_path_map(graph: Graph) -> dict[str, str]:
 
 
 def get_sources(
-    fscache: FileSystemCache, modules: dict[str, str], changed_modules: list[tuple[str, str]]
+    fscache: FileSystemCache,
+    modules: dict[str, str],
+    changed_modules: list[tuple[str, str]],
+    followed: bool,
 ) -> list[BuildSource]:
     sources = []
     for id, path in changed_modules:
         if fscache.isfile(path):
-            sources.append(BuildSource(path, id, None))
+            sources.append(BuildSource(path, id, None, followed=followed))
     return sources
 
 

mypy/test/testcmdline.py

@@ -69,12 +69,10 @@ def test_python_cmdline(testcase: DataDrivenTestCase, step: int) -> None:
     env["PYTHONPATH"] = PREFIX
     if os.path.isdir(extra_path):
         env["PYTHONPATH"] += os.pathsep + extra_path
+    cwd = os.path.join(test_temp_dir, custom_cwd or "")
+    args = [arg.replace("$CWD", os.path.abspath(cwd)) for arg in args]
     process = subprocess.Popen(
-        fixed + args,
-        stdout=subprocess.PIPE,
-        stderr=subprocess.PIPE,
-        cwd=os.path.join(test_temp_dir, custom_cwd or ""),
-        env=env,
+        fixed + args, stdout=subprocess.PIPE, stderr=subprocess.PIPE, cwd=cwd, env=env
     )
     outb, errb = process.communicate()
     result = process.returncode

test-data/unit/cmdline.test

@@ -1505,3 +1505,68 @@ def f():
 [out]
 a.py:2: note: By default the bodies of untyped functions are not checked, consider using --check-untyped-defs
 == Return code: 0
+
+[case testCustomTypeshedDirFilePassedExplicitly]
+# cmd: mypy --custom-typeshed-dir dir m.py dir/stdlib/foo.pyi
+[file m.py]
+1()
+[file dir/stdlib/abc.pyi]
+1()  # Errors are not reported from typeshed by default
+[file dir/stdlib/builtins.pyi]
+class object: pass
+class str(object): pass
+class int(object): pass
+[file dir/stdlib/sys.pyi]
+[file dir/stdlib/types.pyi]
+[file dir/stdlib/typing.pyi]
+[file dir/stdlib/mypy_extensions.pyi]
+[file dir/stdlib/typing_extensions.pyi]
+[file dir/stdlib/foo.pyi]
+1()  # Errors are reported if the file was explicitly passed on the command line
+[file dir/stdlib/VERSIONS]
+[out]
+dir/stdlib/foo.pyi:1: error: "int" not callable
+m.py:1: error: "int" not callable
+
+[case testFileInPythonPathPassedExplicitly1]
+# cmd: mypy $CWD/pypath/foo.py
+[file pypath/foo.py]
+1()
+[out]
+pypath/foo.py:1: error: "int" not callable
+
+[case testFileInPythonPathPassedExplicitly2]
+# cmd: mypy pypath/foo.py
+[file pypath/foo.py]
+1()
+[out]
+pypath/foo.py:1: error: "int" not callable
+
+[case testFileInPythonPathPassedExplicitly3]
+# cmd: mypy -p foo
+# cwd: pypath
+[file pypath/foo/__init__.py]
+1()
+[file pypath/foo/m.py]
+1()
+[out]
+foo/m.py:1: error: "int" not callable
+foo/__init__.py:1: error: "int" not callable
+
+[case testFileInPythonPathPassedExplicitly4]
+# cmd: mypy -m foo
+# cwd: pypath
+[file pypath/foo.py]
+1()
+[out]
+foo.py:1: error: "int" not callable
+
+[case testFileInPythonPathPassedExplicitly5]
+# cmd: mypy -m foo.m
+# cwd: pypath
+[file pypath/foo/__init__.py]
+1()  # TODO: Maybe this should generate errors as well? But how would we decide?
+[file pypath/foo/m.py]
+1()
+[out]
+foo/m.py:1: error: "int" not callable