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Prepare release 2.0 #17

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Prepare release 2.0 #17

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Commits on Jul 26, 2021

  1. add GEX test data

    @ggabernet
    ggabernet committed Jul 26, 2021
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  2. add Analysis field

    @ggabernet
    ggabernet committed Jul 26, 2021
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Commits on Aug 5, 2021

  1. Initial template commit

    @ggabernet
    ggabernet committed Aug 5, 2021
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  2. Merge branch 'TEMPLATE' into template_merge

    @ggabernet
    ggabernet committed Aug 5, 2021
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  3. bump versions 2.0dev

    @ggabernet
    ggabernet committed Aug 5, 2021
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  4. update changelog

    @ggabernet
    ggabernet committed Aug 5, 2021
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  5. add process getreferences

    @ggabernet
    ggabernet committed Aug 5, 2021
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  6. add process cellranger count

    @ggabernet
    ggabernet committed Aug 5, 2021
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  7. add process cellranger mkref

    @ggabernet
    ggabernet committed Aug 5, 2021
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  8. update main.nf

    @ggabernet
    ggabernet committed Aug 5, 2021
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  9. update workflowcellranger lib

    @ggabernet
    ggabernet committed Aug 5, 2021
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  10. update input check

    @ggabernet
    ggabernet committed Aug 5, 2021
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  11. update nextflow config

    @ggabernet
    ggabernet committed Aug 5, 2021
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  12. update input tsv

    @ggabernet
    ggabernet committed Aug 5, 2021
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  13. update cellranger wf

    @ggabernet
    ggabernet committed Aug 5, 2021
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  14. fix build reference

    @ggabernet
    ggabernet committed Aug 5, 2021
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  15. add cellranger count

    @ggabernet
    ggabernet committed Aug 5, 2021
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  16. merge samples gem

    @ggabernet
    ggabernet committed Aug 5, 2021
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  17. fix gem var cellranger count

    @ggabernet
    ggabernet committed Aug 5, 2021
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Commits on Aug 6, 2021

  1. remove old DSL1 comments

    @ggabernet
    ggabernet committed Aug 6, 2021
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  2. add workflow GEX

    @ggabernet
    ggabernet committed Aug 6, 2021
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  3. add versions

    @ggabernet
    ggabernet committed Aug 6, 2021
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  4. update gtf

    @ggabernet
    ggabernet committed Aug 6, 2021
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  5. update gtf

    @ggabernet
    ggabernet committed Aug 6, 2021
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  6. update gtf

    @ggabernet
    ggabernet committed Aug 6, 2021
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  7. update gtf

    @ggabernet
    ggabernet committed Aug 6, 2021
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  8. update gtf

    @ggabernet
    ggabernet committed Aug 6, 2021
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  9. update get reference

    @ggabernet
    ggabernet committed Aug 6, 2021
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  10. fix reference name

    @ggabernet
    ggabernet committed Aug 6, 2021
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  11. handle reference name

    @ggabernet
    ggabernet committed Aug 6, 2021
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  12. fix untar refs

    @ggabernet
    ggabernet committed Aug 6, 2021
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  13. fix referenc name

    @ggabernet
    ggabernet committed Aug 6, 2021
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  14. fix reference name

    @ggabernet
    ggabernet committed Aug 6, 2021
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  15. simplify cellranger count

    @ggabernet
    ggabernet committed Aug 6, 2021
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  16. dump channel

    @ggabernet
    ggabernet committed Aug 6, 2021
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  17. fix ref name value

    @ggabernet
    ggabernet committed Aug 6, 2021
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  18. fix ref name

    @ggabernet
    ggabernet committed Aug 6, 2021
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  19. fix refname

    @ggabernet
    ggabernet committed Aug 6, 2021
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  20. fix refname

    @ggabernet
    ggabernet committed Aug 6, 2021
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  21. fix reference name mkref

    @ggabernet
    ggabernet committed Aug 6, 2021
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  22. test ref.name

    @ggabernet
    ggabernet committed Aug 6, 2021
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  23. test reference.name

    @ggabernet
    ggabernet committed Aug 6, 2021
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Commits on Aug 7, 2021

  1. Merge branch 'dev' into dsl2

    @ggabernet
    ggabernet committed Aug 7, 2021
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  2. update nf-core lint

    @ggabernet
    ggabernet committed Aug 7, 2021
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  3. fix lint errors

    @ggabernet
    ggabernet committed Aug 7, 2021
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  4. update params

    @ggabernet
    ggabernet committed Aug 7, 2021
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  5. fix markdownlint errors

    @ggabernet
    ggabernet committed Aug 7, 2021
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Commits on Aug 8, 2021

  1. update cellranger v6.0.2

    @ggabernet
    ggabernet committed Aug 8, 2021
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Commits on Aug 9, 2021

  1. rm index param

    @ggabernet
    ggabernet committed Aug 9, 2021
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  2. no publish ref

    @ggabernet
    ggabernet committed Aug 9, 2021
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  3. rm igenomes

    @ggabernet
    ggabernet committed Aug 9, 2021
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  4. fix channels reference name

    @ggabernet
    ggabernet committed Aug 9, 2021
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  5. update check samplesheet

    @ggabernet
    ggabernet committed Aug 9, 2021
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  6. remove params.genomes

    @ggabernet
    ggabernet committed Aug 9, 2021
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  7. include multi workflow

    @ggabernet
    ggabernet committed Aug 9, 2021
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  8. samplesheet validation

    @ggabernet
    ggabernet committed Aug 9, 2021
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  9. add fastq multi

    @ggabernet
    ggabernet committed Aug 9, 2021
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  10. add multi features

    @ggabernet
    ggabernet committed Aug 9, 2021
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Commits on Aug 24, 2021

  1. add multi process

    @ggabernet
    ggabernet committed Aug 24, 2021
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  2. add config generating python script

    @ggabernet
    ggabernet committed Aug 24, 2021
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  3. update base config

    @ggabernet
    ggabernet committed Aug 24, 2021
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  4. fix cellranger multi stub

    @ggabernet
    ggabernet committed Aug 24, 2021
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Commits on Aug 26, 2021

  1. fix cellranger collect

    @ggabernet
    ggabernet committed Aug 26, 2021
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Commits on Aug 27, 2021

  1. remove reference name as not needed

    @ggabernet
    ggabernet committed Aug 27, 2021
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  2. add params to nextflow schema

    @ggabernet
    ggabernet committed Aug 27, 2021
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  3. Merge pull request #1 from ggabernet/multi 

    Adding workflow for cellranger multi
    @ggabernet
    ggabernet committed Aug 27, 2021
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Commits on Sep 10, 2021

  1. update usage docs

    @ggabernet
    ggabernet committed Sep 10, 2021
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  2. fix lint

    @ggabernet
    ggabernet committed Sep 10, 2021
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  3. Merge pull request #2 from ggabernet/multi 

    update usage docs
    @ggabernet
    ggabernet committed Sep 10, 2021
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  4. Merge pull request #15 from ggabernet/dsl2 

    Porting cellranger to DSL2
    @ggabernet
    ggabernet committed Sep 10, 2021
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Commits on Oct 8, 2021

  1. import outside of workflow def

    @ggabernet
    ggabernet committed Oct 8, 2021
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Commits on Dec 4, 2021

  1. Merge pull request #18 from ggabernet/dev 

    import outside of workflow def
    @ggabernet
    ggabernet committed Dec 4, 2021
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Commits on Dec 5, 2021

  1. multi input tsv

    @ggabernet
    ggabernet committed Dec 5, 2021
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  2. Merge pull request #19 from ggabernet/dev 

    multi input tsv
    @ggabernet
    ggabernet committed Dec 5, 2021
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Commits on Mar 8, 2022

  1. bump versions 2.0

    @ggabernet
    ggabernet committed Mar 8, 2022
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  2. Merge pull request #20 from ggabernet/dev 

    bump versions 2.0
    @ggabernet
    ggabernet committed Mar 8, 2022
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  3. fixing tests

    @ggabernet
    ggabernet committed Mar 8, 2022
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  4. fix error test cellranger

    @ggabernet
    ggabernet committed Mar 8, 2022
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  5. fix tests

    @ggabernet
    ggabernet committed Mar 8, 2022
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  6. fix workflow imports

    @ggabernet
    ggabernet committed Mar 8, 2022
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  7. fix tests

    @ggabernet
    ggabernet committed Mar 8, 2022
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  8. Merge pull request #21 from ggabernet/dev 

    fixing tests
    @ggabernet
    ggabernet committed Mar 8, 2022
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