v1.0.0

1.0.0 Rinjani (2024-10-11)

by @HomoPolyethylen in #16

Added

• query cancer knowledgebases CGI and CIViC
• specify patient cancer type
• specify custom filters for civic evidence
• template update for nf-core/tools v2.14.1
• full changelog at: https://github.com/qbic-pipelines/variantmtb/commits/1.0.0

Fixed

• issues with how civic evidence gets stored

Dependencies

Deprecated

Removed

• --cancer is not longer supported, specify the patients cancer type in the samplesheet instead, using fields cancer_cgi and cancer_civic

v0.2.0 - Wendelstein

• nextflow secrets for CGI credentials.
• bcftools version 1.18.

v0.1.0dev - initial release

Initial dev release of the qbic-pipelines/variantmtb pipeline