Updates

qiita-spots · Nov 25, 2024 · e28bb9f · e28bb9f
1 parent 2b1e4e9
commit e28bb9f
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Showing 6 changed files with 318 additions and 1,329 deletions.
diff --git a/qp_klp/CHECKLIST.txt b/qp_klp/CHECKLIST.txt
@@ -0,0 +1,9 @@
+Confirm sif behavior works w/new KATHAROseq controls.
+
+MG-SCRIPTS TODOS:
+Confirm NuQCJob works as intended with LS dataset + BX metadata.
+Confirm all audits work as intended in testing.
+
+METAPOOL TODOS:
+Confirm seqpro generates the prep-info files expected after Amanda's recent
+changes. Do this in testing.
diff --git a/qp_klp/tests/test_WorkflowFactory.py b/qp_klp/tests/test_WorkflowFactory.py
@@ -155,14 +155,15 @@ def test_amplicon_workflow_creation(self):
         self.assertEqual(wf.seqtech_type, SEQTECH_NAME_ILLUMINA)
         self.assertEqual(wf.assay_type, ASSAY_NAME_AMPLICON)
 
-    def atest_tellseq_workflow_creation(self):
+    def test_tellseq_workflow_creation(self):
         kwargs = {"uif_path": "qp_klp/tests/data/sample-sheets/metagenomic/"
                   "tellseq/good_sheet_draft1.csv",
                   "qclient": None,
                   "config_fp": "qp_klp/tests/data/configuration.json",
                   "run_identifier": "211021_A00000_0000_SAMPLE",
                   "output_dir": "qp_klp/tests/test_output",
                   "job_id": "78901",
+                  "lane_number": "1",
                   "is_restart": False
                   }
 

diff --git a/qp_klp/tests/test_amplicon_step.txt b/qp_klp/tests/test_amplicon_step.txt