fix failing tests #595
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| name: testing | |
| on: | |
| push: | |
| pull_request: | |
| # weekly | |
| schedule: | |
| - cron: '3 7 * * 4' | |
| jobs: | |
| testing: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.9', '3.10', '3.11', '3.12'] | |
| # exclude: | |
| # - os: windows-latest | |
| # python-version: '3.9' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install system dependencies in Linux | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt install -y python3-tk libboost-all-dev libopenblas-dev libfftw3-dev libsuitesparse-dev | |
| # Do not need to do this if not installing S4 | |
| - name: Install system dependencies in MacOS | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| brew install fftw suite-sparse openblas lapack boost | |
| - name: Install python dependencies | |
| run: | | |
| python -m pip install uv | |
| uv pip install --system . | |
| uv pip install --system numpy wheel setuptools | |
| - name: Install S4 in Linux | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| git clone https://github.com/phoebe-p/S4 | |
| cd S4 | |
| make S4_pyext | |
| cd .. | |
| rm -rf S4 | |
| # Not working as of March 2024. Cannot find cholmod.h header file. Reason unclear. | |
| - name: Install S4 in MacOS | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| git clone https://github.com/phoebe-p/S4 | |
| cd S4 | |
| make S4_pyext --file="Makefile.m1" | |
| cd .. | |
| rm -rf S4 | |
| - name: Test with pytest | |
| env: | |
| NUMBA_DISABLE_JIT: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12' && '1' || '0' }} | |
| run: | | |
| uv pip install --system pytest-cov pytest-rerunfailures | |
| pytest --cov-report= --cov=rayflare tests/ --reruns 5 | |
| - name: Codecov | |
| if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12' | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| run: | | |
| uv pip install --system codecov | |
| codecov |