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BrainCatalogue

Citizen science portal for comparative brain anatomy.

The BrainCatalogue portal:

  • Displays information pages for different subjects (animal species)
  • Pages can contain 3D Magnetic Resonance Volumes encoded in compressed Nifti format
  • Pages can also contain a 3D mesh viewer for surfaces encoded in Stanford PLY format
  • Managing user log in, and user annotations
  • The MRI viewer -- AtlasMaker -- supports interactive manual segmentation based on the WebSockets protocol
  • AtlasMaker supports painting, erasing, filling, different pen sizes and infinite undo
  • User's manual segmentations are stored in the server, and snapshots are taken periodically
  • The MRI viewer can present data in 3 orthogonal planes (sagittal, coronal, axial). The current slice can be changed using a slider, +/- buttons, or the arrow keys
  • On iPads the cursor is replaced by a 'precise cursor' where the position of the finger is dissociated from the position of the painting cursor
  • During interactive segmentation, users can discuss using a simple 'chat' interface
  • The layout of the portal is dynamically adjusted to desktop computers, tablets and phones (large, medium and small responsive layouts)

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Citizen science portal for comparative brain anatomy

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