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DSEGOG-255 EPAC Simulated Data #66
Commits on Jun 26, 2023
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Commits on Jul 4, 2023
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Commits on Jul 5, 2023
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DSEGOG-255 Fix linting for
util/
- This directory wasn't being checked for formatting and linting issues in the Nox sessions before this commit, so there are some changes to files outside of the `util/realistic_data/`
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Commits on Jul 6, 2023
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Commits on Jul 18, 2023
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Commits on Jul 21, 2023
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Commits on Jul 25, 2023
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Commits on Jul 26, 2023
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DSEGOG-255 Change directory structure of data generation
- Files are now not stored into directories by day - this fits with the ingestion echo script format
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Use Poetry in generation script instead of external virtualenv
- This can now be done because EPAC Data Sim can be specified as a dependency in Poetry (where it couldn't be done previously because its a GitHub repo, had some issues with that)
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Commits on Jul 28, 2023
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Commits on Jul 31, 2023
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DSEGOG-255 Change daily ingestor script to compare filenames against …
…current datetime
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Commits on Aug 4, 2023
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DSEGOG-255 Move EPAC DataSim dependency to its own group
- This is so we can exclude it if we don't have the correct SSH permissions to access/clone the repo. For example, the CI cannot clone the repo
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DSEGOG-255 Support both timestamp formats for HDF file ingestion
- This is so the old Gemini test data still works
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Commits on Aug 14, 2023
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Commits on Aug 15, 2023
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Commits on Aug 22, 2023
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DSEGOG-255 Remove thread pools for uploading multiple images
- This seemed to cause issues when mass uploading HDF files which contained multiple images in each. Uploading images sequentially seemed to fix the issue
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Commits on Sep 19, 2023
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DSEGOG-255 Upgrade EPAC-DataSim version
- This has also updated the lock file for lots of other dependencies...
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Commits on Sep 21, 2023
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Commits on Sep 22, 2023
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DSEGOG-255 Swap times for start and end dates in conversion script
- For single day experiments, the start date was 23:59 and the end date was 00:00 - an experiment ended before it even started!
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Commits on Sep 29, 2023
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DSEGOG-255 Add
--timeout
to API startup command- This seems to help with ingesting large HDF files
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Merge branch 'DSEGOG-258-multiple-instrument-support' into DSEGOG-255…
…-realistic-test-data
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Commits on Oct 3, 2023
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DSEGOG-255 Remove
--log-config
from example command- This isn't needed, logging config location is controlled by the constant called `LOG_CONFIG_LOCATION`
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Commits on Oct 4, 2023
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Commits on Oct 5, 2023
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Commits on Oct 11, 2023
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DSEGOG-255 Disable SSH functionality in script
- This doesn't work on GitHub Actions so needs investigating at a later date - just want to get GitHub Actions working for right now
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Commits on Oct 12, 2023
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Commits on Oct 17, 2023
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DSEGOG-255 Go back to multi-threading for uploading images
- I've restored this functionality as I now understand why I was having issues with it. The previous implementation creates as many threads as their were images. When you have 69 images (and therefore 69 threads), it's now obvious that my dev VM simply ran out of memory trying to ingest a HDF file with that number of images. I've made the number of threads configurable via the `upload_image_threads` option - This change has tested to be more reliable and has sped up ingestion of the 14TB of simulated data quite a bit. Image processing looks to be a bottleneck when ingesting HDF files containing many images and I think further performance improvements can be made, but this is to be explored in the future.
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Commits on Oct 19, 2023
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DSEGOG-255 Improve error handling on
EchoInterface
- This approach is a little safer, returning `None` if no message is in the dictionary, rather than throwing a `KeyError`. I had this happen when I exceeded the quota through our S3 storage - Also removed a TODO that I noticed isn't relevant, the bucket name is replaced in CI
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Commits on Nov 3, 2023
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DSEGOG-255 Store waveforms as a list of floats
- This reduces the amount of size required to store them using the simulated data we now have access too
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DSEGOG-255 Add local command handler
- This will be useful when the script is run on local machines where SSH is an issue (e.g. GitHub Actions) - Also included a couple of linting fixes in this PR
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Commits on Nov 10, 2023
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DSEGOG-255 Remove
_id
being created in script- Experiments are stored using ObjectIDs, not custom identifers
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Commits on Nov 15, 2023
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Commits on Nov 17, 2023
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Commits on Feb 6, 2024
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Commits on Feb 22, 2024
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DSEGOG-255 removed excess quotation marks
these caused an error where none of the database collections where dropped when using poetry run python util/realistic_data/ingest_echo_data.py
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Commits on Feb 23, 2024
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Commits on Feb 26, 2024
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Commits on Feb 27, 2024
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