EnsDeconv (Ensemble Deconvolution) uses ensemble learning to robustly estimate cellular fractions from bulk omics.
devtools::install_github("randel/EnsDeconv")
https://randel.github.io/EnsDeconv/
https://shiny.crc.pitt.edu/ensdeconv/
Cai, M., Yue, M., Chen, T., Liu, J., Forno, E., Lu, X., Billiar, T., Celedón, J., Mckennan, C., Chen, W., Wang, J., 2022. Robust and accurate estimation of cellular fraction from tissue omics data via ensemble deconvolution. Bioinformatics 38, 3004–3010. 10.1093/bioinformatics/btac279