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@ratschlab

Biomedical Informatics at ETH Zurich

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  1. RGAN RGAN Public

    Recurrent (conditional) generative adversarial networks for generating real-valued time series data.

    Python 642 181

  2. SOM-VAE SOM-VAE Public

    TensorFlow implementation of the SOM-VAE model as described in https://arxiv.org/abs/1806.02199

    Python 191 32

  3. GP-VAE GP-VAE Public

    TensorFlow implementation for the GP-VAE model described in https://arxiv.org/abs/1907.04155

    Python 128 28

  4. metagraph metagraph Public

    Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

    C++ 115 17

  5. spladder spladder Public

    Tool for the detection and quantification of alternative splicing events from RNA-Seq data.

    Python 103 33

  6. dpsom dpsom Public

    Code associated with ACM-CHIL 21 paper 'T-DPSOM - An Interpretable Clustering Method for Unsupervised Learning of Patient Health States'

    Python 67 16

Repositories

Showing 10 of 112 repositories
  • HistoPlexer Public
    ratschlab/HistoPlexer’s past year of commit activity
    Python 0 0 0 0 Updated Dec 10, 2024
  • metagraph_paper_resources Public

    This repository contains resources related to the manuscript describing the MetaGraph framework

    ratschlab/metagraph_paper_resources’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Dec 9, 2024
  • metagraph Public

    Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

    ratschlab/metagraph’s past year of commit activity
    C++ 115 GPL-3.0 17 10 14 Updated Dec 9, 2024
  • sshash Public Forked from jermp/sshash

    A compressed, associative, exact, and weighted dictionary for k-mers.

    ratschlab/sshash’s past year of commit activity
    C++ 0 MIT 18 0 1 Updated Dec 9, 2024
  • tools-project-archives Public

    A commandline tool to create and handle project archives

    ratschlab/tools-project-archives’s past year of commit activity
    Python 0 MIT 1 5 1 Updated Nov 19, 2024
  • genomic-gnn Public

    Repository for the paper "Learning Genomic Sequence Representations using Graph Neural Networks over De Bruijn Graph"

    ratschlab/genomic-gnn’s past year of commit activity
    Python 4 MIT 2 0 0 Updated Nov 11, 2024
  • gLM-collection Public

    Collection of genomic Language Models

    ratschlab/gLM-collection’s past year of commit activity
    1 0 0 0 Updated Nov 8, 2024
  • nanotron-petagraph Public Forked from huggingface/nanotron

    Minimalistic large language model 3D-parallelism training - Forked to train Petagraph

    ratschlab/nanotron-petagraph’s past year of commit activity
    Python 0 Apache-2.0 133 0 0 Updated Nov 6, 2024
  • ICMSeg Public
    ratschlab/ICMSeg’s past year of commit activity
    0 0 0 0 Updated Nov 5, 2024
  • immunopepper Public

    Code for the ImmunoPepper project

    ratschlab/immunopepper’s past year of commit activity
    Python 2 1 2 1 Updated Nov 5, 2024

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