amber_to_gmx_by_XL Convert AMBER input files (prmcrd, prmtop) to GROMACS format (gro, top) Usage: perl amber_to_gmx_by_XL.pl -top [name_of_amber_top_file] -crd [name_of_amber_crd_file] -name [name_of_your_molecule] -glycam [yes_or_no]