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CI Failure (bad_deltas anomaly) in RedpandaUpgradeTest.test_workloads_through_releases #11842

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VladLazar opened this issue Jul 3, 2023 · 10 comments · Fixed by #12013
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area/cloud-storage Shadow indexing subsystem ci-failure kind/bug Something isn't working sev/low Bugs which are non-functional paper cuts, e.g. typos, issues in log messages

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@VladLazar
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https://buildkite.com/redpanda/redpanda/builds/32382#01891a7b-8348-4279-b724-633f25042597

Module: rptest.tests.workload_upgrade_runner_test
Class:  RedpandaUpgradeTest
Method: test_workloads_through_releases
test_id:    rptest.tests.workload_upgrade_runner_test.RedpandaUpgradeTest.test_workloads_through_releases
status:     FAIL
run time:   15 minutes 7.355 seconds


    RuntimeError("Object storage scrub detected fatal anomalies of type {'ntpr_bad_deltas'}")
Traceback (most recent call last):
  File "/usr/local/lib/python3.10/dist-packages/ducktape/tests/runner_client.py", line 135, in run
    data = self.run_test()
  File "/usr/local/lib/python3.10/dist-packages/ducktape/tests/runner_client.py", line 227, in run_test
    return self.test_context.function(self.test)
  File "/root/tests/rptest/utils/mode_checks.py", line 63, in f
    return func(*args, **kwargs)
  File "/root/tests/rptest/services/cluster.py", line 159, in wrapped
    self.redpanda.stop_and_scrub_object_storage()
  File "/root/tests/rptest/services/redpanda.py", line 3708, in stop_and_scrub_object_storage
    raise RuntimeError(
RuntimeError: Object storage scrub detected fatal anomalies of type {'ntpr_bad_deltas'}
@VladLazar VladLazar added kind/bug Something isn't working ci-failure area/cloud-storage Shadow indexing subsystem labels Jul 3, 2023
@VladLazar
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@jcsp
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jcsp commented Jul 3, 2023

This could either be a bug in a historic redpanda or a bug in the tool's handling of legacy manifests which miss some deltas. Until we know otherwise, let's assume it's a real issue.

@andijcr andijcr assigned andijcr and unassigned andijcr Jul 3, 2023
@andijcr
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andijcr commented Jul 3, 2023

from test_log.debug:

    "ntpr_bad_deltas": [
      "kafka/topic-MinimalWorkload-31ff1f08-6d03-44c8-878e-0a7581c16ce0/0_15"
    ],
    
    ...
      "partitions": {
    "kafka/topic-MinimalWorkload-31ff1f08-6d03-44c8-878e-0a7581c16ce0/0_15": {
      "bytes": 19621,
      "raw_start_offset": 0,
      "raw_last_offset": 60,
      "kafka_lwm": 0,
      "kafka_hwm": 12,
      "lifecycle_status": null
    },

this i produced by this class

class MinimalWorkload(PWorkload):
    def __init__(self, ctx: RedpandaTest) -> None:
        self.ctx = ctx
        self.topic = TopicSpec(
            name=f"topic-{self.__class__.__name__}-{str(uuid.uuid4())}",
            replication_factor=3)

    def begin(self):
        self.ctx.client().create_topic(self.topic)

    def end(self):
        self.ctx.client().delete_topic(self.topic.name)

    def on_cluster_upgraded(self, version: tuple[int, int, int]) -> int:
        offset = RpkTool(self.ctx.redpanda).produce(topic=self.topic.name,
                                                    key=f"{version}",
                                                    msg=str(uuid.uuid4()))
        self.ctx.logger.info(f"produced to {self.topic.name} at {offset=}")
        return PWorkload.DONE

Which generates a simple message on each cluster version:

[INFO  - 2023-07-03 07:26:05,845 - workload_upgrade_runner_test - setUp - lineno:211]: going through these versions: [(22, 1, 11), (22, 1, 10), (22, 1, 11), (22, 2, 13), (22, 2, 12), (22, 2, 13), (22, 3, 22), (22, 3, 21), (22, 3, 22), (23, 1, 13), (23, 1, 12), (23, 1, 13), (23, 2, 1)]

so 13 messages in total.
loglines on for this topic:
MinimalWorkload.log.txt

@andijcr
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andijcr commented Jul 5, 2023

#11848

running the check after every upgrade step, shows that ntpr_bad_deltas is generated after installing and checking HEAD.

this is 40000000_meta_kafka_topic-MinimalWorkload-fcb57d39-5b31-4c2a-84d6-a063912da293_0_15_manifest.json
, but it seems fine. I'm modifying the test to catch stderr from the tool

{
  "version": 1,
  "namespace": "kafka",
  "topic": "topic-MinimalWorkload-fcb57d39-5b31-4c2a-84d6-a063912da293",
  "partition": 0,
  "revision": 15,
  "last_offset": 65,
  "insync_offset": 67,
  "start_offset": 0,
  "segments": {
    "0-1-v1.log": {
      "is_compacted": false,
      "size_bytes": 723,
      "committed_offset": 1,
      "base_offset": 0,
      "base_timestamp": 1688558529552,
      "max_timestamp": 1688558529552,
      "delta_offset": 0,
      "archiver_term": 2,
      "segment_term": 1
    },
    "2-2-v1.log": {
      "is_compacted": false,
      "size_bytes": 893,
      "committed_offset": 4,
      "base_offset": 2,
      "base_timestamp": 1688558538599,
      "max_timestamp": 1688558540400,
      "delta_offset": 1,
      "archiver_term": 3,
      "segment_term": 2
    },
    "5-3-v1.log": {
      "is_compacted": false,
      "size_bytes": 893,
      "committed_offset": 7,
      "base_offset": 5,
      "base_timestamp": 1688558551240,
      "max_timestamp": 1688558551240,
      "delta_offset": 3,
      "archiver_term": 4,
      "segment_term": 3
    },
    "8-4-v1.log": {
      "is_compacted": false,
      "size_bytes": 778,
      "committed_offset": 9,
      "base_offset": 8,
      "base_timestamp": 1688558568085,
      "max_timestamp": 1688558568085,
      "delta_offset": 5,
      "archiver_term": 5,
      "segment_term": 4
    },
    "10-4-v1.log": {
      "is_compacted": false,
      "size_bytes": 115,
      "committed_offset": 10,
      "base_offset": 10,
      "base_timestamp": 1688558603445,
      "max_timestamp": 1688558603445,
      "delta_offset": 7,
      "archiver_term": 5,
      "segment_term": 4
    },
    "11-5-v1.log": {
      "is_compacted": false,
      "size_bytes": 889,
      "committed_offset": 13,
      "base_offset": 11,
      "base_timestamp": 1688558604763,
      "max_timestamp": 1688558604763,
      "delta_offset": 7,
      "archiver_term": 6,
      "segment_term": 5
    },
    "14-6-v1.log": {
      "is_compacted": false,
      "size_bytes": 780,
      "committed_offset": 15,
      "base_offset": 14,
      "base_timestamp": 1688558616529,
      "max_timestamp": 1688558616529,
      "delta_offset": 10,
      "archiver_term": 7,
      "segment_term": 6
    },
    "16-7-v1.log": {
      "is_compacted": false,
      "size_bytes": 895,
      "committed_offset": 18,
      "base_offset": 16,
      "base_timestamp": 1688558634572,
      "max_timestamp": 1688558634572,
      "delta_offset": 12,
      "archiver_term": 8,
      "segment_term": 7
    },
    "19-8-v1.log": {
      "is_compacted": false,
      "size_bytes": 780,
      "committed_offset": 20,
      "base_offset": 19,
      "base_timestamp": 1688558636115,
      "max_timestamp": 1688558636115,
      "delta_offset": 14,
      "archiver_term": 9,
      "segment_term": 8
    },
    "21-9-v1.log": {
      "is_compacted": false,
      "size_bytes": 780,
      "committed_offset": 22,
      "base_offset": 21,
      "base_timestamp": 1688558643409,
      "max_timestamp": 1688558643409,
      "delta_offset": 16,
      "archiver_term": 10,
      "segment_term": 9
    },
    "23-9-v1.log": {
      "is_compacted": false,
      "size_bytes": 115,
      "committed_offset": 23,
      "base_offset": 23,
      "base_timestamp": 1688558658893,
      "max_timestamp": 1688558658893,
      "delta_offset": 18,
      "archiver_term": 10,
      "segment_term": 9
    },
    "24-10-v1.log": {
      "is_compacted": false,
      "size_bytes": 890,
      "committed_offset": 26,
      "base_offset": 24,
      "base_timestamp": 1688558660205,
      "max_timestamp": 1688558660205,
      "delta_offset": 18,
      "archiver_term": 11,
      "segment_term": 10
    },
    "27-11-v1.log": {
      "is_compacted": false,
      "size_bytes": 781,
      "committed_offset": 28,
      "base_offset": 27,
      "base_timestamp": 1688558679033,
      "max_timestamp": 1688558679033,
      "delta_offset": 21,
      "archiver_term": 12,
      "segment_term": 11,
      "delta_offset_end": 23,
      "sname_format": 2
    },
    "29-12-v1.log": {
      "is_compacted": false,
      "size_bytes": 916,
      "committed_offset": 31,
      "base_offset": 29,
      "base_timestamp": 1688558720824,
      "max_timestamp": 1688558720824,
      "delta_offset": 23,
      "archiver_term": 13,
      "segment_term": 12,
      "delta_offset_end": 25,
      "sname_format": 2
    },
    "32-13-v1.log": {
      "is_compacted": false,
      "size_bytes": 801,
      "committed_offset": 33,
      "base_offset": 32,
      "base_timestamp": 1688558730400,
      "max_timestamp": 1688558730400,
      "delta_offset": 25,
      "archiver_term": 14,
      "segment_term": 13,
      "delta_offset_end": 27,
      "sname_format": 2
    },
    "34-14-v1.log": {
      "is_compacted": false,
      "size_bytes": 801,
      "committed_offset": 35,
      "base_offset": 34,
      "base_timestamp": 1688558746342,
      "max_timestamp": 1688558746342,
      "delta_offset": 27,
      "archiver_term": 15,
      "segment_term": 14,
      "delta_offset_end": 29,
      "sname_format": 2
    },
    "36-15-v1.log": {
      "is_compacted": false,
      "size_bytes": 801,
      "committed_offset": 37,
      "base_offset": 36,
      "base_timestamp": 1688558758614,
      "max_timestamp": 1688558758614,
      "delta_offset": 29,
      "archiver_term": 16,
      "segment_term": 15,
      "delta_offset_end": 31,
      "sname_format": 2
    },
    "38-15-v1.log": {
      "is_compacted": false,
      "size_bytes": 115,
      "committed_offset": 38,
      "base_offset": 38,
      "base_timestamp": 1688558771863,
      "max_timestamp": 1688558771863,
      "delta_offset": 31,
      "archiver_term": 16,
      "segment_term": 15,
      "delta_offset_end": 31,
      "sname_format": 2
    },
    "39-16-v1.log": {
      "is_compacted": false,
      "size_bytes": 932,
      "committed_offset": 41,
      "base_offset": 39,
      "base_timestamp": 1688558793052,
      "max_timestamp": 1688558793052,
      "delta_offset": 31,
      "archiver_term": 17,
      "segment_term": 16,
      "delta_offset_end": 34,
      "sname_format": 2
    },
    "42-17-v1.log": {
      "is_compacted": false,
      "size_bytes": 916,
      "committed_offset": 44,
      "base_offset": 42,
      "base_timestamp": 1688558819043,
      "max_timestamp": 1688558819043,
      "delta_offset": 34,
      "archiver_term": 18,
      "segment_term": 17,
      "delta_offset_end": 36,
      "sname_format": 2
    },
    "45-18-v1.log": {
      "is_compacted": false,
      "size_bytes": 801,
      "committed_offset": 46,
      "base_offset": 45,
      "base_timestamp": 1688558832873,
      "max_timestamp": 1688558832873,
      "delta_offset": 36,
      "archiver_term": 19,
      "segment_term": 18,
      "delta_offset_end": 38,
      "sname_format": 2
    },
    "47-19-v1.log": {
      "is_compacted": false,
      "size_bytes": 801,
      "committed_offset": 48,
      "base_offset": 47,
      "base_timestamp": 1688558848396,
      "max_timestamp": 1688558848396,
      "delta_offset": 38,
      "archiver_term": 20,
      "segment_term": 19,
      "delta_offset_end": 40,
      "sname_format": 2
    },
    "49-20-v1.log": {
      "is_compacted": false,
      "size_bytes": 801,
      "committed_offset": 50,
      "base_offset": 49,
      "base_timestamp": 1688558856094,
      "max_timestamp": 1688558856094,
      "delta_offset": 40,
      "archiver_term": 21,
      "segment_term": 20,
      "delta_offset_end": 42,
      "sname_format": 2
    },
    "51-20-v1.log": {
      "is_compacted": false,
      "size_bytes": 115,
      "committed_offset": 51,
      "base_offset": 51,
      "base_timestamp": 1688558874201,
      "max_timestamp": 1688558874201,
      "delta_offset": 42,
      "archiver_term": 21,
      "segment_term": 20,
      "delta_offset_end": 42,
      "sname_format": 2
    },
    "52-21-v1.log": {
      "is_compacted": false,
      "size_bytes": 932,
      "committed_offset": 54,
      "base_offset": 52,
      "base_timestamp": 1688558883747,
      "max_timestamp": 1688558883747,
      "delta_offset": 42,
      "archiver_term": 22,
      "segment_term": 21,
      "delta_offset_end": 45,
      "sname_format": 2
    },
    "55-22-v1.log": {
      "is_compacted": false,
      "size_bytes": 801,
      "committed_offset": 56,
      "base_offset": 55,
      "base_timestamp": 1688558891949,
      "max_timestamp": 1688558891949,
      "delta_offset": 45,
      "archiver_term": 23,
      "segment_term": 22,
      "delta_offset_end": 47,
      "sname_format": 2
    },
    "57-22-v1.log": {
      "is_compacted": false,
      "size_bytes": 115,
      "committed_offset": 57,
      "base_offset": 57,
      "base_timestamp": 1688558895942,
      "max_timestamp": 1688558895942,
      "delta_offset": 47,
      "archiver_term": 23,
      "segment_term": 22,
      "delta_offset_end": 47,
      "sname_format": 2
    },
    "58-23-v1.log": {
      "is_compacted": false,
      "size_bytes": 932,
      "committed_offset": 60,
      "base_offset": 58,
      "base_timestamp": 1688558910333,
      "max_timestamp": 1688558910333,
      "delta_offset": 47,
      "archiver_term": 24,
      "segment_term": 23,
      "delta_offset_end": 50,
      "sname_format": 2
    },
    "61-24-v1.log": {
      "is_compacted": false,
      "size_bytes": 916,
      "committed_offset": 63,
      "base_offset": 61,
      "base_timestamp": 1688558918102,
      "max_timestamp": 1688558918102,
      "delta_offset": 50,
      "archiver_term": 25,
      "segment_term": 24,
      "delta_offset_end": 52,
      "sname_format": 2
    },
    "64-25-v1.log": {
      "is_compacted": false,
      "size_bytes": 801,
      "committed_offset": 65,
      "base_offset": 64,
      "base_timestamp": 1688558927819,
      "max_timestamp": 1688558927819,
      "delta_offset": 52,
      "archiver_term": 26,
      "segment_term": 25,
      "delta_offset_end": 54,
      "sname_format": 2
    }
  }
}

@piyushredpanda
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@andijcr what is next here?

@piyushredpanda
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This is showing up as failing a lot.

@andijcr
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andijcr commented Jul 10, 2023

finally got some more output out of rp-storage-tool

[kafka/topic-MinimalWorkload-373f4aa2-e4c5-4cc1-a8e0-27f8e7915612/0_15] Segment 24 has delta lower than previous
[2023-07-10T11:18:06Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-373f4aa2-e4c5-4cc1-a8e0-27f8e7915612/0_15] Segment 25 has delta lower than previous
[2023-07-10T11:18:06Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-373f4aa2-e4c5-4cc1-a8e0-27f8e7915612/0_15] Segment 2 has delta lower than previous
[2023-07-10T11:18:06Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-373f4aa2-e4c5-4cc1-a8e0-27f8e7915612/0_15] Segment 5 has delta lower than previous
[2023-07-10T11:18:06Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-373f4aa2-e4c5-4cc1-a8e0-27f8e7915612/0_15] Segment 7 has delta lower than previous
[2023-07-10T11:18:06Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-373f4aa2-e4c5-4cc1-a8e0-27f8e7915612/0_15] Segment 8 has delta lower than previous
[2023-07-10T11:18:06Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-373f4aa2-e4c5-4cc1-a8e0-27f8e7915612/0_15] Segment 11 has delta lower than previous
[2023-07-10T11:18:06Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-373f4aa2-e4c5-4cc1-a8e0-27f8e7915612/0_15] Segment 13 has delta lower than previous
[2023-07-10T11:18:06Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-373f4aa2-e4c5-4cc1-a8e0-27f8e7915612/0_15] Segment 14 has delta lower than previous
[2023-07-10T11:18:06Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-373f4aa2-e4c5-4cc1-a8e0-27f8e7915612/0_15] Segment 17 has delta lower than previous
[2023-07-10T11:18:06Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-373f4aa2-e4c5-4cc1-a8e0-27f8e7915612/0_15] Segment 20 has delta lower than previous

unfortunately, cloud_diagnostic.zip does not contains the file, but nothing that can't be fixed in ducktape

@andijcr
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andijcr commented Jul 10, 2023

It's caused by rp-storage-tool not accounting for old segment_meta with a defaulted delta_offset_end. In redpanda, this is already handled in partition_manifest by checking the value of delta_offset_end != model::offset to decide if it's valid or not.

in the decoded manifest, delta_offset_end that have the value 9223372036854775808 should be ignored. (it should be a negative number, std::numeric_limits<int64_t>::min(), not sure if the error is in the datatype used or in the json handling of int64_t)

rp-storage-tool stderr output: preoutput=b'
[2023-07-10T15:39:39Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-f845d5ef-79fc-4fe9-bd7a-b29937805023/0_15] Segment 2 has delta lower than previous
[2023-07-10T15:39:39Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-f845d5ef-79fc-4fe9-bd7a-b29937805023/0_15] Segment 5 has delta lower than previous
[2023-07-10T15:39:39Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-f845d5ef-79fc-4fe9-bd7a-b29937805023/0_15] Segment 8 has delta lower than previous
[2023-07-10T15:39:39Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-f845d5ef-79fc-4fe9-bd7a-b29937805023/0_15] Segment 10 has delta lower than previous
[2023-07-10T15:39:39Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-f845d5ef-79fc-4fe9-bd7a-b29937805023/0_15] Segment 11 has delta lower than previous
[2023-07-10T15:39:39Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-f845d5ef-79fc-4fe9-bd7a-b29937805023/0_15] Segment 14 has delta lower than previous
[2023-07-10T15:39:39Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-f845d5ef-79fc-4fe9-bd7a-b29937805023/0_15] Segment 17 has delta lower than previous
[2023-07-10T15:39:39Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-f845d5ef-79fc-4fe9-bd7a-b29937805023/0_15] Segment 19 has delta lower than previous
[2023-07-10T15:39:39Z WARN  rp_storage_tool::bucket_reader] [kafka/topic-MinimalWorkload-f845d5ef-79fc-4fe9-bd7a-b29937805023/0_15] Segment 21 has delta lower than previous

manifest v1, json
manifest_v1.json.txt
looking at the first error message:

    "0-1-v1.log": {
      "is_compacted": false,
      "size_bytes": 726,
      "committed_offset": 1,
      "base_offset": 0,
      "base_timestamp": 1689002716441,
      "max_timestamp": 1689002716441,
      "delta_offset": 0,
      "archiver_term": 2,
      "segment_term": 1
    },
    "2-2-v1.log": {
      "is_compacted": false,
      "size_bytes": 896,
      "committed_offset": 4,
      "base_offset": 2,
      "base_timestamp": 1689002743839,
      "max_timestamp": 1689002744739,
      "delta_offset": 1,
      "archiver_term": 3,
      "segment_term": 2
    },

segment.base_offset=2 does not have a predecessor with delta_offset_end, so i could not trigger rp-storage-tool.

manifest v2 in bin format (and decoded json representation)
30000000_meta_kafka_topic-MinimalWorkload-f845d5ef-79fc-4fe9-bd7a-b29937805023_0_15_manifest.bin.0.21.0.22.1689002716441.1689002895505deleteme.txt
manifest_v2.bin.json.txt

  "segments": {
    "0-1-v1.log": {
      "base_offset": 0,
      "committed_offset": 1,
      "is_compacted": false,
      "size_bytes": 726,
      "archiver_term": 2,
      "delta_offset": 0,
      "base_timestamp": 1689002716441,
      "max_timestamp": 1689002716441,
      "ntp_revision": 15,
      "sname_format": 1,
      "segment_term": 1,
      "delta_offset_end": 9223372036854775808
    },
    "8-4-v1.log": {
      "base_offset": 8,
      "committed_offset": 9,
      "is_compacted": false,
      "size_bytes": 781,
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@andijcr : Sorry not clear, so a tool defect and no real RP issue?

@andijcr
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andijcr commented Jul 11, 2023

@andijcr : Sorry not clear, so a tool defect and no real RP issue?

tool defect

@VladLazar VladLazar added sev/low Bugs which are non-functional paper cuts, e.g. typos, issues in log messages and removed sev/medium Bugs that do not meet criteria for high or critical, but are more severe than low. labels Jul 11, 2023
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area/cloud-storage Shadow indexing subsystem ci-failure kind/bug Something isn't working sev/low Bugs which are non-functional paper cuts, e.g. typos, issues in log messages
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