UCSF pyem

UCSF pyem is a collection of Python modules and command-line utilities for electron microscopy of biological samples.

Documentation for the programs can be found in their usage text, comments in code, and in the Wiki of this repository.

The entire collection is licensed under the terms of the GNU Public License, version 3 (GPLv3).

How to cite

Please cite the UCSF pyem code repository DOI: 10.5281/zenodo.3576630.

Asarnow, D., Palovcak, E., Cheng, Y. UCSF pyem v0.5. Zenodo https://doi.org/10.5281/zenodo.3576630 (2019)

To install UCSF pyem, please follow the instructions in the project wiki.

The most popular feature of UCSF pyem is exporting particle metadata from cryoSPARC. Detailed instructions can be found in the project wiki.

(C) 2016-2019 Daniel Asarnow
University of California, San Francisco

Name		Name	Last commit message	Last commit date
Latest commit History 889 Commits
pyem		pyem
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
activate		activate
angdist.py		angdist.py
cfsc.py		cfsc.py
changelog.md		changelog.md
csparc2star.py		csparc2star.py
ctf2star.py		ctf2star.py
disparticle.py		disparticle.py
emcalc.py		emcalc.py
map.py		map.py
mask.py		mask.py
mcstar.py		mcstar.py
par2star.py		par2star.py
pose.py		pose.py
project.py		project.py
projection_subtraction.py		projection_subtraction.py
recenter.py		recenter.py
reconstruct.py		reconstruct.py
requirements.txt		requirements.txt
setup.py		setup.py
sort.py		sort.py
stack.py		stack.py
star.py		star.py
star2bild.py		star2bild.py
subparticles.py		subparticles.py
subset.py		subset.py
varmap.py		varmap.py