Added xlsx in package.json and in JsCoverageApp. Added a line in webp…

…ack.config to avoid fs problem : pugjs/pug-loader#8

package.json

@@ -11,7 +11,9 @@
   "mainOutput": "main",
   "dependencies": {
     "react-router": "^0.13.2",
-    "react": "~0.13.1"
+    "react": "~0.13.1",
+    "collections": "~1.2.2",
+    "xlsx": "~0.8.0"
   },
   "devDependencies": {
     "grunt": "~0.4.5",
@@ -38,7 +40,6 @@
     "grunt-contrib-copy": "~0.5.0",
     "grunt-contrib-clean": "~0.6.0",
     "less-loader": "^2.0.0",
-    "react-hot-loader": "^1.0.7",
-    "collections": "~1.2.2"
+    "react-hot-loader": "^1.0.7"
   }
 }

src/scripts/components/JsCoverageQcApp.js

@@ -11,6 +11,7 @@ require('../../styles/main.css');
 var Amplicon = require('../models/Amplicon');
 var Bin = require('../models/Bin');
 var Vcf = require('../models/Vcf');
+var XLSX = require('xlsx');
 
 var imageURL = require('../../images/yeoman.png');
 
@@ -36,10 +37,15 @@ function generateReport(parameters){
 	variantText = getResponseText(variantFileUrl);
 	variantFileLineCount = variantText.split("\n").length;
 	*/
-	debugger;
-	var vcf = new Vcf("", parameters.vcfFile.result, "", parameters.exonFile.result,
-		"", parameters.ampliconFile.result, "", parameters.variantTsv.result.split("\n").length);
-	console.log(vcf);
+	//debugger;
+	//var vcf = new Vcf("", parameters.vcfFile.result, "", parameters.exonFile.result,
+	//	"", parameters.ampliconFile.result, "", parameters.variantTsv.result.split("\n").length);
+	//console.log(vcf);
+
+	var workbookcopy;
+	if(parameters.variantTsv !== null || typeof parameters.variantTsv !== 'undefined'){
+		//XLSX.write(workbookcopy, 'TSV copy');
+	}
 }
 
 var InputFile = React.createClass({

webpack.config.js

@@ -55,6 +55,9 @@ module.exports = {
       loader: 'url-loader?limit=8192'
     }]
   },
+  node: {
+    fs: "empty"
+  },
 
   plugins: [
     new webpack.HotModuleReplacementPlugin(),