Also remove nested inclusions when removing a subtree #8965

Job	Run time
rust-paths-filter	4s
cpp-paths-filter	3s
Minimum Wheel Build / Set Config (linux-x64)	1s
Checks / Test Python Docs	34s
Checks / Python lints (ruff, mypy, …)	6m 6s
Checks / Rerun lints	2m 28s
Checks / Check if running codegen would produce any changes	2m 41s
Checks / Misc formatting	28s
Checks / Spell Check	6s
Build JS / Build	4m 3s
Build Web / Build Web (wasm32 + wasm-bindgen)	4m 4s
Update PR Body / Update PR body	25s
C++ tests	0s
Rust Checks / Rust lints (fmt, check, cranky, tests, doc)	17m 12s
Rust Checks / Check Rust web build (wasm32 + wasm-bindgen)	3m 33s
Rust Checks / Lint TOML files	16s
Rust Checks / Cargo Deny	2m 21s
Minimum Wheel Build / Build Wheels (ubuntu-latest-16-cores)	3m 3s
Build Examples / Build Examples	4m 37s
Run Notebook / Run notebook	2m 21s
Minimum Wheel Test / Set Config (linux-x64)	2s
Minimum Wheel Test / Test Wheels (ubuntu-latest-16-cores)	13m 43s
Upload Web / Upload web build to google cloud (wasm32 + wasm-bindgen)	12s
Save PR Summary / Create HTML summary for PR	39s
Track Sizes / Track Sizes	1m 2s
Upload Examples / Upload Examples to Google Cloud	21s
	1h 10m 25s

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