Implement pre-commit checks and format files

.clang-format

@@ -7,4 +7,4 @@ DerivePointerAlignment: false
 PointerAlignment: Left
 
 IndentWidth: 4
-ColumnLimit : 110
+ColumnLimit: 110

.cmake-format.yaml

@@ -0,0 +1,6 @@
+# https://cmake-format.readthedocs.io/en/latest/configuration.html
+
+format:
+  tab_size: 4
+  separate_ctrl_name_with_space: true
+  separate_fn_name_with_space: false

.github/workflows/validation.yml

@@ -21,15 +21,15 @@ defaults:
 jobs:
   framework-validation:
     uses: rest-for-physics/framework/.github/workflows/validation.yml@master
-  
+
   libCheck:
     name: Validate library
     runs-on: ubuntu-latest
     container:
       image: ghcr.io/lobis/root-geant4-garfield:rest-for-physics
     steps:
       - uses: actions/checkout@v3
-      - run:  python3 pipeline/validateLibrary.py .
+      - run: python3 pipeline/validateLibrary.py .
 
   build-axionlib:
     name: Build only axionlib
@@ -43,6 +43,10 @@ jobs:
         with:
           cmake-flags: "-DCMAKE_INSTALL_PREFIX=${{ env.REST_PATH }} -DCMAKE_BUILD_TYPE=${{ env.CMAKE_BUILD_TYPE }} -DREST_WELCOME=ON -DRESTLIB_AXION=ON -DREST_MPFR=ON"
           branch: ${{ env.BRANCH_NAME }}
+      - name: Verify pre-commit config files match
+        run: |
+          cd $GITHUB_WORKSPACE
+          curl https://raw.githubusercontent.com/rest-for-physics/framework/master/scripts/validatePreCommitConfig.py | python
       - name: Cache framework installation
         id: axionlib-install-cache
         uses: actions/cache@v3
@@ -79,25 +83,25 @@ jobs:
       image: ghcr.io/lobis/root-geant4-garfield:rest-for-physics
     needs: [ build-axionlib ]
     steps:
-    - uses: actions/checkout@v3
-    - name: Restore cache
-      uses: actions/cache@v3
-      id: axionlib-install-cache
-      with:
-        key: ${{ env.BRANCH_NAME }}-${{ github.sha }}
-        path: ${{ env.REST_PATH }}
-    - name: Basic physics tests
-      run: |
-        source ${{ env.REST_PATH }}/thisREST.sh
-        cd pipeline/physics/
-        wget https://sultan.unizar.es/axionlib-data/bufferGas/He.abs
-        wget https://sultan.unizar.es/axionlib-data/bufferGas/He.nff
-        wget https://sultan.unizar.es/axionlib-data/bufferGas/Ne.abs
-        wget https://sultan.unizar.es/axionlib-data/bufferGas/Ne.nff
-        wget https://sultan.unizar.es/axionlib-data/bufferGas/bufferGases.rml
-        wget https://sultan.unizar.es/axionlib-data/magneticField/fields.rml
-        wget https://sultan.unizar.es/axionlib-data/magneticField/Bykovskiy_201906.dat
-        restRoot -b -q AxionPhysicsValidation.C
+      - uses: actions/checkout@v3
+      - name: Restore cache
+        uses: actions/cache@v3
+        id: axionlib-install-cache
+        with:
+          key: ${{ env.BRANCH_NAME }}-${{ github.sha }}
+          path: ${{ env.REST_PATH }}
+      - name: Basic physics tests
+        run: |
+          source ${{ env.REST_PATH }}/thisREST.sh
+          cd pipeline/physics/
+          wget https://sultan.unizar.es/axionlib-data/bufferGas/He.abs
+          wget https://sultan.unizar.es/axionlib-data/bufferGas/He.nff
+          wget https://sultan.unizar.es/axionlib-data/bufferGas/Ne.abs
+          wget https://sultan.unizar.es/axionlib-data/bufferGas/Ne.nff
+          wget https://sultan.unizar.es/axionlib-data/bufferGas/bufferGases.rml
+          wget https://sultan.unizar.es/axionlib-data/magneticField/fields.rml
+          wget https://sultan.unizar.es/axionlib-data/magneticField/Bykovskiy_201906.dat
+          restRoot -b -q AxionPhysicsValidation.C
 
   Metadata:
     name: Check metadata
@@ -106,63 +110,63 @@ jobs:
       image: ghcr.io/lobis/root-geant4-garfield:rest-for-physics
     needs: [ build-axionlib ]
     steps:
-    - uses: actions/checkout@v3
-    - name: Restore cache
-      uses: actions/cache@v3
-      id: axionlib-install-cache
-      with:
-        key: ${{ env.BRANCH_NAME }}-${{ github.sha }}
-        path: ${{ env.REST_PATH }}
-    - name: Magnetic field
-      run: |
-        source ${{ env.REST_PATH }}/thisREST.sh
-        cd pipeline/metadata/magneticField/
-        wget https://rest-for-physics.github.io/axionlib-data/magneticField/fields.rml
-        wget https://rest-for-physics.github.io/axionlib-data/magneticField/Bykovskiy_201906.dat
-        python magneticField.py
-        cd trilinear
-        wget https://rest-for-physics.github.io/axionlib-data/magneticField/fields.rml
-        restRoot -b -q GetMagneticField_test.C
-        cd ../boundary/
-        restRoot -b -q Boundaries_test.C
-    - name: Optics Mirrors
-      run: |
-        source ${{ env.REST_PATH }}/thisREST.sh
-        cd pipeline/metadata/optics/
-        wget https://rest-for-physics.github.io/axionlib-data/optics/optics.rml
-        wget https://rest-for-physics.github.io/axionlib-data/opticsMirror/mirrors.rml
-        wget https://rest-for-physics.github.io/axionlib-data/opticsMirror/Reflectivity_Single_C_30_SiO2_0.N901f
-        wget https://rest-for-physics.github.io/axionlib-data/opticsMirror/Transmission_Single_C_30_SiO2_0.N901f
-        wget https://rest-for-physics.github.io/axionlib-data/opticsMirror/Reflectivity_Single_Au_250_Ni_0.4.N901f
-        wget https://rest-for-physics.github.io/axionlib-data/opticsMirror/Transmission_Single_Au_250_Ni_0.4.N901f
-        python mirrors.py
-    - name: MCPL Optics
-      run: |
-        source ${{ env.REST_PATH }}/thisREST.sh
-        cd pipeline/metadata/optics/
-        wget https://rest-for-physics.github.io/axionlib-data/optics/optics.rml
-        python mcpl.py
-    - name: X-ray transmission
-      run: |
-        source ${{ env.REST_PATH }}/thisREST.sh
-        cd pipeline/metadata/transmission/
-        wget https://rest-for-physics.github.io/axionlib-data/transmission/windows.rml
-        wget https://rest-for-physics.github.io/axionlib-data/transmission/Al.sol
-        wget https://rest-for-physics.github.io/axionlib-data/transmission/Si.sol
-        wget https://rest-for-physics.github.io/axionlib-data/transmission/Si3N4.sol
-        export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${{ env.REST_PATH }}/mpfr-4.0.2/install/lib
-        python windowPlot.py
-    - name: Solar flux
-      run: |
-        source ${{ env.REST_PATH }}/thisREST.sh
-        cd pipeline/metadata/solarFlux/
-        wget https://rest-for-physics.github.io/axionlib-data/solarFlux/fluxes.rml
-        wget https://rest-for-physics.github.io/axionlib-data/solarFlux/Dummy_Galan_202202.spt
-        wget https://rest-for-physics.github.io/axionlib-data/solarFlux/Primakoff_Gianotti_201904.dat
-        wget https://rest-for-physics.github.io/axionlib-data/solarFlux/Primakoff_LennertHoof_202203.dat
-        python solarTests.py
-        python solarPlot.py
-        python compare.py
+      - uses: actions/checkout@v3
+      - name: Restore cache
+        uses: actions/cache@v3
+        id: axionlib-install-cache
+        with:
+          key: ${{ env.BRANCH_NAME }}-${{ github.sha }}
+          path: ${{ env.REST_PATH }}
+      - name: Magnetic field
+        run: |
+          source ${{ env.REST_PATH }}/thisREST.sh
+          cd pipeline/metadata/magneticField/
+          wget https://rest-for-physics.github.io/axionlib-data/magneticField/fields.rml
+          wget https://rest-for-physics.github.io/axionlib-data/magneticField/Bykovskiy_201906.dat
+          python magneticField.py
+          cd trilinear
+          wget https://rest-for-physics.github.io/axionlib-data/magneticField/fields.rml
+          restRoot -b -q GetMagneticField_test.C
+          cd ../boundary/
+          restRoot -b -q Boundaries_test.C
+      - name: Optics Mirrors
+        run: |
+          source ${{ env.REST_PATH }}/thisREST.sh
+          cd pipeline/metadata/optics/
+          wget https://rest-for-physics.github.io/axionlib-data/optics/optics.rml
+          wget https://rest-for-physics.github.io/axionlib-data/opticsMirror/mirrors.rml
+          wget https://rest-for-physics.github.io/axionlib-data/opticsMirror/Reflectivity_Single_C_30_SiO2_0.N901f
+          wget https://rest-for-physics.github.io/axionlib-data/opticsMirror/Transmission_Single_C_30_SiO2_0.N901f
+          wget https://rest-for-physics.github.io/axionlib-data/opticsMirror/Reflectivity_Single_Au_250_Ni_0.4.N901f
+          wget https://rest-for-physics.github.io/axionlib-data/opticsMirror/Transmission_Single_Au_250_Ni_0.4.N901f
+          python mirrors.py
+      - name: MCPL Optics
+        run: |
+          source ${{ env.REST_PATH }}/thisREST.sh
+          cd pipeline/metadata/optics/
+          wget https://rest-for-physics.github.io/axionlib-data/optics/optics.rml
+          python mcpl.py
+      - name: X-ray transmission
+        run: |
+          source ${{ env.REST_PATH }}/thisREST.sh
+          cd pipeline/metadata/transmission/
+          wget https://rest-for-physics.github.io/axionlib-data/transmission/windows.rml
+          wget https://rest-for-physics.github.io/axionlib-data/transmission/Al.sol
+          wget https://rest-for-physics.github.io/axionlib-data/transmission/Si.sol
+          wget https://rest-for-physics.github.io/axionlib-data/transmission/Si3N4.sol
+          export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:${{ env.REST_PATH }}/mpfr-4.0.2/install/lib
+          python windowPlot.py
+      - name: Solar flux
+        run: |
+          source ${{ env.REST_PATH }}/thisREST.sh
+          cd pipeline/metadata/solarFlux/
+          wget https://rest-for-physics.github.io/axionlib-data/solarFlux/fluxes.rml
+          wget https://rest-for-physics.github.io/axionlib-data/solarFlux/Dummy_Galan_202202.spt
+          wget https://rest-for-physics.github.io/axionlib-data/solarFlux/Primakoff_Gianotti_201904.dat
+          wget https://rest-for-physics.github.io/axionlib-data/solarFlux/Primakoff_LennertHoof_202203.dat
+          python solarTests.py
+          python solarPlot.py
+          python compare.py
 
   Ray-tracing:
     name: Check ray-tracing processing chain
@@ -171,45 +175,45 @@ jobs:
       image: ghcr.io/lobis/root-geant4-garfield:rest-for-physics
     needs: [ build-axionlib ]
     steps:
-    - uses: actions/checkout@v3
-    - name: Restore cache
-      uses: actions/cache@v3
-      id: axionlib-install-cache
-      with:
-        key: ${{ env.BRANCH_NAME }}-${{ github.sha }}
-        path: ${{ env.REST_PATH }}
-    - name: XMM optics bench ray-tracing
-      run: |
-        source ${{ env.REST_PATH }}/thisREST.sh
-        export REST_NEVENTS=1000
-        export REST_RUN=100
-        cd pipeline/ray-tracing/optics/
-        wget https://rest-for-physics.github.io/axionlib-data/optics/xmm.rml
-        wget https://rest-for-physics.github.io/axionlib-data/optics/XMM.Wolter
-        wget https://rest-for-physics.github.io/axionlib-data/opticsMirror/Reflectivity_Single_Au_250_Ni_0.4.N901f
-        wget https://rest-for-physics.github.io/axionlib-data/opticsMirror/Transmission_Single_Au_250_Ni_0.4.N901f
-        restManager --c opticsBench.rml
-        restRoot -b -q ValidateXMM.C'("OpticsBench_Yaw_0.05_Dev_0.005_BabyIAXO_Run00100.root")'
-    - name: Window transmission
-      run: |
-        source ${{ env.REST_PATH }}/thisREST.sh
-        cd pipeline/ray-tracing/transmission/
-        wget https://rest-for-physics.github.io/axionlib-data/transmission/Si.sol
-        restManager --c emptyWindow.rml
-        restRoot ValidateTransmission.C'("EmptyVacuumWindow.root", 0.07, 0.09)'
-        restManager --c shiftedWindow.rml
-        restRoot ValidateTransmission.C'("ShiftedVacuumWindow", 0.3, 0.5)'
-        restManager --c siWindow.rml
-        restRoot -b -q ValidateTransmission.C'("SiWindow.root", 0.9, 1)'
-    - name: Axion-field integration
-      run: |
-        source ${{ env.REST_PATH }}/thisREST.sh
-        cd pipeline/ray-tracing/axion-field/
-        wget https://rest-for-physics.github.io/axionlib-data/magneticField/fields.rml
-        wget https://rest-for-physics.github.io/axionlib-data/magneticField/Bykovskiy_201906.dat
-        wget https://sultan.unizar.es/axionlib-data/bufferGas/He.abs
-        wget https://sultan.unizar.es/axionlib-data/bufferGas/He.nff
-        wget https://rest-for-physics.github.io/axionlib-data/bufferGas/bufferGases.rml
-        restManager --c photonConversion.rml
-        restRoot -b -q Validate.C'(5.86614e-19, 1.61288)'
-        python3 validateStreamer.py
+      - uses: actions/checkout@v3
+      - name: Restore cache
+        uses: actions/cache@v3
+        id: axionlib-install-cache
+        with:
+          key: ${{ env.BRANCH_NAME }}-${{ github.sha }}
+          path: ${{ env.REST_PATH }}
+      - name: XMM optics bench ray-tracing
+        run: |
+          source ${{ env.REST_PATH }}/thisREST.sh
+          export REST_NEVENTS=1000
+          export REST_RUN=100
+          cd pipeline/ray-tracing/optics/
+          wget https://rest-for-physics.github.io/axionlib-data/optics/xmm.rml
+          wget https://rest-for-physics.github.io/axionlib-data/optics/XMM.Wolter
+          wget https://rest-for-physics.github.io/axionlib-data/opticsMirror/Reflectivity_Single_Au_250_Ni_0.4.N901f
+          wget https://rest-for-physics.github.io/axionlib-data/opticsMirror/Transmission_Single_Au_250_Ni_0.4.N901f
+          restManager --c opticsBench.rml
+          restRoot -b -q ValidateXMM.C'("OpticsBench_Yaw_0.05_Dev_0.005_BabyIAXO_Run00100.root")'
+      - name: Window transmission
+        run: |
+          source ${{ env.REST_PATH }}/thisREST.sh
+          cd pipeline/ray-tracing/transmission/
+          wget https://rest-for-physics.github.io/axionlib-data/transmission/Si.sol
+          restManager --c emptyWindow.rml
+          restRoot ValidateTransmission.C'("EmptyVacuumWindow.root", 0.07, 0.09)'
+          restManager --c shiftedWindow.rml
+          restRoot ValidateTransmission.C'("ShiftedVacuumWindow", 0.3, 0.5)'
+          restManager --c siWindow.rml
+          restRoot -b -q ValidateTransmission.C'("SiWindow.root", 0.9, 1)'
+      - name: Axion-field integration
+        run: |
+          source ${{ env.REST_PATH }}/thisREST.sh
+          cd pipeline/ray-tracing/axion-field/
+          wget https://rest-for-physics.github.io/axionlib-data/magneticField/fields.rml
+          wget https://rest-for-physics.github.io/axionlib-data/magneticField/Bykovskiy_201906.dat
+          wget https://sultan.unizar.es/axionlib-data/bufferGas/He.abs
+          wget https://sultan.unizar.es/axionlib-data/bufferGas/He.nff
+          wget https://rest-for-physics.github.io/axionlib-data/bufferGas/bufferGases.rml
+          restManager --c photonConversion.rml
+          restRoot -b -q Validate.C'(5.86614e-19, 1.61288)'
+          python3 validateStreamer.py

.pre-commit-config.yaml

@@ -0,0 +1,35 @@
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.4.0
+    hooks:
+      - id: check-added-large-files
+      - id: check-case-conflict
+      - id: check-merge-conflict
+      - id: check-symlinks
+      - id: check-yaml
+      - id: check-xml
+      - id: requirements-txt-fixer
+      - id: end-of-file-fixer
+        exclude: external/.*$
+      - id: mixed-line-ending
+        exclude: external/.*$
+      - id: trailing-whitespace
+        exclude: external/.*$
+
+  - repo: https://github.com/pre-commit/mirrors-clang-format
+    rev: v15.0.6
+    hooks:
+      - id: clang-format
+        exclude: external/.*$
+
+  - repo: https://github.com/cheshirekow/cmake-format-precommit
+    rev: v0.6.13
+    hooks:
+      - id: cmake-format
+        additional_dependencies: [ pyyaml ]
+      # - id: cmake-lint
+
+  - repo: https://github.com/psf/black
+    rev: 22.12.0
+    hooks:
+      - id: black