Handle sparse matrix

Passing of a sparse matrix is now possible

Added fixed seed

In order to increase reproduceability a fixed seed was added to cyclone() ensuring comperable results across subsequent calls on the same data. This affects the random shuffling within cyclone().

Fixed cli issue

Merge pull request #19 from rfechtner/cli

Added CLI version

Command Line Interface

cyclone and sandbag are now even easier to call from the command line.

Easy as:
$ cyclone -i {mat.csv} -o {prediction.csv}

Fixed min_iter issue

Merge pull request #17 from rfechtner/issue_min_iter

Printing marker pairs composition after filtering

Multicore Cyclone

New feature:

• Multithreading now available for pais.cyclone()

Minor changes and fixes:

• pais.sandbag() now significally faster
• pais.sandbag() more stable in terms of memory access

Fixed Bug - CC_Score

Fixed wrong phase allocation for cell cycle prediction.
Cells where either G1 or G2M score is greater than 0.5 should be assigned to the greather of those two not of all

Bug fix - Loading datasets

v3.0.12

Update test_cyclone.py

Fix for issue #6

Merge pull request #7 from rfechtner/fix_i6_cache_file_required

fix for issue #6.

v3.0.10b4

Update .travis.yml