Releases: rfechtner/pypairs
Releases · rfechtner/pypairs
Handle sparse matrix
Added fixed seed
In order to increase reproduceability a fixed seed was added to cyclone() ensuring comperable results across subsequent calls on the same data. This affects the random shuffling within cyclone().
Fixed cli issue
Merge pull request #19 from rfechtner/cli Added CLI version
Command Line Interface
cyclone and sandbag are now even easier to call from the command line.
Easy as:
$ cyclone -i {mat.csv} -o {prediction.csv}
Fixed min_iter issue
Merge pull request #17 from rfechtner/issue_min_iter Printing marker pairs composition after filtering
Multicore Cyclone
New feature:
- Multithreading now available for
pais.cyclone()
Minor changes and fixes:
pais.sandbag()
now significally fasterpais.sandbag()
more stable in terms of memory access
Fixed Bug - CC_Score
Fixed wrong phase allocation for cell cycle prediction.
Cells where either G1 or G2M score is greater than 0.5 should be assigned to the greather of those two not of all
Bug fix - Loading datasets
v3.0.12 Update test_cyclone.py
Fix for issue #6
Merge pull request #7 from rfechtner/fix_i6_cache_file_required fix for issue #6.