You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Fixed bug in SKAT/SKATO tests when applying Firth/SPA correction
Improved SPA implementation by computing both tail probabilities (previous implementation gave more conservative test with high case control imbalance)
New option --set-singletons to specify which sites to include in singleton masks when building masks by adding a third column in the AAF file (see documentation)
New option --l1-phenoList to run level 1 model only for a subset of the phenotypes when using --run-l1 (see wiki)
Fixed bug in joint tests (occurred when some of the burden masks were ignored due to low MAC/failed test and program would crash)
Fix bug when using apply-rint (introduced in v3.0.3)
Added additional convergence criterion for ridge logistic regression based on fractional change
Fix convergence issue for null Firth when fitted probabilities 0/1 occurred
Fix format mismatch in sum stats file with joint tests (extra NA entry was added when input file had dosages)