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Regenie v3.5
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@joellembatchou joellembatchou released this 03 Jul 19:47
· 31 commits to master since this release
v3.5
212e7b7
  • Added CHR/POS columns to snplist output file when using --write-mask-snplist to make it tabixable
  • Genotype counts are now reported in the sumstats file when using --no-split (note these are based on all of the analyzed samples)
    • The added columns names are N_RR|N_RA|N_AA for homRef/het/homALT genotypes, respectively.
  • Improved efficiency of LOOCV scheme in ridge level 0
  • Detect carriage return in fam/psam/bim/pvar/sample files
  • Bug fix for BURDEN-ACAT test when only a single mask is in the GENE_P group
  • Address convergence failures when applying Firth correction to single variants in gene-based tests
Assets 6
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