Automated GHA update

bin/windows/contrib/4.2/PACKAGES

@@ -181,11 +181,11 @@ Depends: R (>= 3.5.0), MASS
 License: GPL-2
 
 Package: callr
-Version: 3.7.3
+Version: 3.7.5
 Depends: R (>= 3.4)
 Imports: processx (>= 3.6.1), R6, utils
-Suggests: asciicast, cli (>= 1.1.0), covr, mockery, ps, rprojroot,
-        spelling, testthat (>= 3.0.0), withr (>= 2.3.0)
+Suggests: asciicast (>= 2.3.1), cli (>= 1.1.0), covr, mockery, ps,
+        rprojroot, spelling, testthat (>= 3.2.0), withr (>= 2.3.0)
 License: MIT + file LICENSE
 
 Package: CAMERA
@@ -239,8 +239,8 @@ License: BSD_3_clause + file LICENSE
 Archs: x64
 
 Package: circlize
-Version: 0.4.15
-Depends: R (>= 3.0.0), graphics
+Version: 0.4.16
+Depends: R (>= 4.0.0), graphics
 Imports: GlobalOptions (>= 0.1.2), shape, grDevices, utils, stats,
         colorspace, methods, grid
 Suggests: knitr, dendextend (>= 1.0.1), ComplexHeatmap (>= 2.0.0),
@@ -413,11 +413,12 @@ Enhances: igraph
 License: GPL (>= 2)
 
 Package: DBI
-Version: 1.2.0
+Version: 1.2.2
 Depends: methods, R (>= 3.0.0)
-Suggests: blob, covr, DBItest, dbplyr, downlit, dplyr, glue, hms,
-        knitr, magrittr, nanoarrow, RMariaDB, rmarkdown, rprojroot,
-        RSQLite (>= 1.1-2), testthat (>= 3.0.0), vctrs, xml2
+Suggests: arrow, blob, covr, DBItest, dbplyr, downlit, dplyr, glue,
+        hms, knitr, magrittr, nanoarrow (>= 0.3.0.1), RMariaDB,
+        rmarkdown, rprojroot, RSQLite (>= 1.1-2), testthat (>= 3.0.0),
+        vctrs, xml2
 License: LGPL (>= 2.1)
 
 Package: dbplyr
@@ -517,7 +518,7 @@ License: MIT + file LICENSE
 Archs: x64
 
 Package: DT
-Version: 0.31
+Version: 0.32
 Imports: htmltools (>= 0.3.6), htmlwidgets (>= 1.3), httpuv, jsonlite
         (>= 0.9.16), magrittr, crosstalk, jquerylib, promises
 Suggests: knitr (>= 1.8), rmarkdown, shiny (>= 1.6), bslib, future,
@@ -1042,10 +1043,10 @@ Suggests: knitr, rcorpora, rmarkdown, testthat
 License: MIT + file LICENSE
 
 Package: igraph
-Version: 2.0.1.1
+Version: 2.0.2
 Depends: methods, R (>= 3.5.0)
 Imports: cli, graphics, grDevices, lifecycle, magrittr, Matrix,
-        pkgconfig (>= 2.0.0), rlang, stats, utils
+        pkgconfig (>= 2.0.0), rlang, stats, utils, vctrs
 LinkingTo: cpp11 (>= 0.4.7)
 Suggests: ape (>= 5.7-0.1), callr, decor, digest, graph, igraphdata,
         knitr, rgl, rmarkdown, scales, stats4, tcltk, testthat, vdiffr,
@@ -1275,7 +1276,7 @@ License: GPL (>= 2)
 Archs: x64
 
 Package: magick
-Version: 2.8.2
+Version: 2.8.3
 Imports: Rcpp (>= 0.12.12), magrittr, curl
 LinkingTo: Rcpp
 Suggests: av (>= 0.3), spelling, jsonlite, methods, knitr, rmarkdown,
@@ -1542,9 +1543,10 @@ License: MIT + file LICENSE
 Archs: x64
 
 Package: parallelly
-Version: 1.36.0
+Version: 1.37.0
 Imports: parallel, tools, utils
 License: LGPL (>= 2.1)
+Archs: x64
 
 Package: patRoon
 Version: 2.3.1
@@ -1972,15 +1974,15 @@ License: MIT + file LICENSE
 Archs: x64
 
 Package: recipes
-Version: 1.0.9
+Version: 1.0.10
 Depends: dplyr (>= 1.1.0), R (>= 3.6)
 Imports: cli, clock (>= 0.6.1), ellipsis, generics (>= 0.1.2), glue,
         gower, hardhat (>= 1.3.0), ipred (>= 0.9-12), lifecycle (>=
         1.0.3), lubridate (>= 1.8.0), magrittr, Matrix, purrr (>=
         1.0.0), rlang (>= 1.1.0), stats, tibble, tidyr (>= 1.0.0),
         tidyselect (>= 1.2.0), timeDate, utils, vctrs (>= 0.5.0), withr
 Suggests: covr, ddalpha, dials (>= 1.2.0), ggplot2, igraph, kernlab,
-        knitr, modeldata (>= 0.1.1), parsnip (>= 0.1.7), RANN,
+        knitr, modeldata (>= 0.1.1), parsnip (>= 1.2.0), RANN,
         RcppRoll, rmarkdown, rpart, rsample, RSpectra, splines2,
         testthat (>= 3.0.0), workflows, xml2
 License: MIT + file LICENSE
@@ -2306,7 +2308,7 @@ Suggests: HDF5Array (>= 1.7.5), annotate, AnnotationDbi, hgu95av2.db,
 License: Artistic-2.0
 
 Package: survival
-Version: 3.5-7
+Version: 3.5-8
 Priority: recommended
 Depends: R (>= 3.5.0)
 Imports: graphics, Matrix, methods, splines, stats, utils

bin/windows/contrib/4.3/PACKAGES

@@ -195,11 +195,11 @@ Depends: R (>= 3.5.0), MASS
 License: GPL-2
 
 Package: callr
-Version: 3.7.3
+Version: 3.7.5
 Depends: R (>= 3.4)
 Imports: processx (>= 3.6.1), R6, utils
-Suggests: asciicast, cli (>= 1.1.0), covr, mockery, ps, rprojroot,
-        spelling, testthat (>= 3.0.0), withr (>= 2.3.0)
+Suggests: asciicast (>= 2.3.1), cli (>= 1.1.0), covr, mockery, ps,
+        rprojroot, spelling, testthat (>= 3.2.0), withr (>= 2.3.0)
 License: MIT + file LICENSE
 
 Package: CAMERA
@@ -427,11 +427,12 @@ Enhances: igraph
 License: GPL (>= 2)
 
 Package: DBI
-Version: 1.2.0
+Version: 1.2.2
 Depends: methods, R (>= 3.0.0)
-Suggests: blob, covr, DBItest, dbplyr, downlit, dplyr, glue, hms,
-        knitr, magrittr, nanoarrow, RMariaDB, rmarkdown, rprojroot,
-        RSQLite (>= 1.1-2), testthat (>= 3.0.0), vctrs, xml2
+Suggests: arrow, blob, covr, DBItest, dbplyr, downlit, dplyr, glue,
+        hms, knitr, magrittr, nanoarrow (>= 0.3.0.1), RMariaDB,
+        rmarkdown, rprojroot, RSQLite (>= 1.1-2), testthat (>= 3.0.0),
+        vctrs, xml2
 License: LGPL (>= 2.1)
 
 Package: dbplyr
@@ -532,7 +533,7 @@ License: MIT + file LICENSE
 Archs: x64
 
 Package: DT
-Version: 0.31
+Version: 0.32
 Imports: htmltools (>= 0.3.6), htmlwidgets (>= 1.3), httpuv, jsonlite
         (>= 0.9.16), magrittr, crosstalk, jquerylib, promises
 Suggests: knitr (>= 1.8), rmarkdown, shiny (>= 1.6), bslib, future,
@@ -1058,10 +1059,10 @@ Suggests: knitr, rcorpora, rmarkdown, testthat
 License: MIT + file LICENSE
 
 Package: igraph
-Version: 2.0.1.1
+Version: 2.0.2
 Depends: methods, R (>= 3.5.0)
 Imports: cli, graphics, grDevices, lifecycle, magrittr, Matrix,
-        pkgconfig (>= 2.0.0), rlang, stats, utils
+        pkgconfig (>= 2.0.0), rlang, stats, utils, vctrs
 LinkingTo: cpp11 (>= 0.4.7)
 Suggests: ape (>= 5.7-0.1), callr, decor, digest, graph, igraphdata,
         knitr, rgl, rmarkdown, scales, stats4, tcltk, testthat, vdiffr,
@@ -1291,7 +1292,7 @@ License: GPL (>= 2)
 Archs: x64
 
 Package: magick
-Version: 2.8.2
+Version: 2.8.3
 Imports: Rcpp (>= 0.12.12), magrittr, curl
 LinkingTo: Rcpp
 Suggests: av (>= 0.3), spelling, jsonlite, methods, knitr, rmarkdown,
@@ -1582,9 +1583,10 @@ License: MIT + file LICENSE
 Archs: x64
 
 Package: parallelly
-Version: 1.36.0
+Version: 1.37.0
 Imports: parallel, tools, utils
 License: LGPL (>= 2.1)
+Archs: x64
 
 Package: patRoon
 Version: 2.3.1
@@ -2025,15 +2027,15 @@ License: MIT + file LICENSE
 Archs: x64
 
 Package: recipes
-Version: 1.0.9
+Version: 1.0.10
 Depends: dplyr (>= 1.1.0), R (>= 3.6)
 Imports: cli, clock (>= 0.6.1), ellipsis, generics (>= 0.1.2), glue,
         gower, hardhat (>= 1.3.0), ipred (>= 0.9-12), lifecycle (>=
         1.0.3), lubridate (>= 1.8.0), magrittr, Matrix, purrr (>=
         1.0.0), rlang (>= 1.1.0), stats, tibble, tidyr (>= 1.0.0),
         tidyselect (>= 1.2.0), timeDate, utils, vctrs (>= 0.5.0), withr
 Suggests: covr, ddalpha, dials (>= 1.2.0), ggplot2, igraph, kernlab,
-        knitr, modeldata (>= 0.1.1), parsnip (>= 0.1.7), RANN,
+        knitr, modeldata (>= 0.1.1), parsnip (>= 1.2.0), RANN,
         RcppRoll, rmarkdown, rpart, rsample, RSpectra, splines2,
         testthat (>= 3.0.0), workflows, xml2
 License: MIT + file LICENSE
@@ -2400,7 +2402,7 @@ Suggests: HDF5Array (>= 1.7.5), annotate, AnnotationDbi, hgu95av2.db,
 License: Artistic-2.0
 
 Package: survival
-Version: 3.5-7
+Version: 3.5-8
 Priority: recommended
 Depends: R (>= 3.5.0)
 Imports: graphics, Matrix, methods, splines, stats, utils

patRoonDeps-4.2.tsv

@@ -22,13 +22,13 @@ bslib	0.6.1
 ca	0.71.1	
 cachem	1.0.8	
 calibrate	1.7.7	
-callr	3.7.3	
+callr	3.7.5	
 CAMERA	1.54.0	
 caret	6.0-94	
 caTools	1.18.2	
 cellranger	1.1.0	
 checkmate	2.3.1	
-circlize	0.4.15	
+circlize	0.4.16	
 Ckmeans.1d.dp	4.3.5	
 class	7.3-22	
 classInt	0.4-10	
@@ -49,7 +49,7 @@ crosstalk	1.2.1
 curl	5.2.0	
 data.table	1.15.0	
 data.tree	1.1.0	
-DBI	1.2.0	
+DBI	1.2.2	
 dbplyr	2.4.0	
 dbscan	1.1-12	
 DelayedArray	0.23.2	
@@ -60,7 +60,7 @@ digest	0.6.34
 docopt	0.7.1	
 doParallel	1.0.17	
 dplyr	1.1.4	
-DT	0.31	
+DT	0.32	
 dtplyr	1.3.1	
 dynamicTreeCut	1.63-1	
 e1071	1.7-14	
@@ -124,7 +124,7 @@ htmlwidgets	1.6.4
 httpuv	1.6.14	
 httr	1.4.7	
 ids	1.0.1	
-igraph	2.0.1.1	
+igraph	2.0.2	
 impute	1.72.3	
 InterpretMSSpectrum	1.3.3	0731d92accdf5db2a6d7b03c24b2d324b67b1c72
 ipred	0.9-14	
@@ -152,7 +152,7 @@ lifecycle	1.0.4
 limma	3.54.2	
 listenv	0.9.1	
 lubridate	1.9.3	
-magick	2.8.2	
+magick	2.8.3	
 magrittr	2.0.3	
 MALDIquant	1.22.2	
 MASS	7.3-60.0.1	
@@ -169,7 +169,7 @@ MLmetrics	1.1.1
 ModelMetrics	1.2.2.2	
 modelr	0.1.11	
 MS2Quant	1.1.0	46e0c77ef4961a29a73a388105eeb28e33839630
-MS2Tox	0.3.2	7e5574291c834b1ab9e50f8adf74a703188f6a6f
+MS2Tox	0.3.2	9895f745536bf7d244f2f05cef186f9fc91be602
 MsCoreUtils	1.10.0	
 MsFeatures	1.6.0	
 MSnbase	2.24.2	
@@ -185,8 +185,8 @@ nontarget	2.2	e30221585182bc66e1f8e1113b2c1103a0f2cb56
 nontargetData	1.1	75b2a92cd549f72cc71dfe7b86bd42947d62f2c4
 numDeriv	2016.8-1.1	
 openssl	2.1.1	
-parallelly	1.36.0	
-patRoon	2.3.1	31f6f6a15df48cda66d1a9abcf2ecb3ec1e06c13
+parallelly	1.37.0	
+patRoon	2.3.1	32746bbfaa262d367ff0162c349c567c4bedd6c4
 pcaMethods	1.90.0	
 permute	0.9-7	
 pillar	1.9.0	
@@ -239,7 +239,7 @@ reactR	0.5.0
 readMzXmlData	2.8.3	
 readr	2.1.5	
 readxl	1.4.3	
-recipes	1.0.9	
+recipes	1.0.10	
 registry	0.5-1	
 rematch	2.0.0	
 rematch2	2.1.2	
@@ -279,7 +279,7 @@ stringi	1.8.3
 stringr	1.5.1	
 styler	1.10.2	
 SummarizedExperiment	1.28.0	
-survival	3.5-7	
+survival	3.5-8	
 svglite	2.1.3	
 sys	3.4.2	
 systemfonts	1.0.5	

patRoonDeps-4.3.tsv

@@ -24,7 +24,7 @@ bslib	0.6.1
 ca	0.71.1	
 cachem	1.0.8	
 calibrate	1.7.7	
-callr	3.7.3	
+callr	3.7.5	
 CAMERA	1.58.0	
 caret	6.0-94	
 caTools	1.18.2	
@@ -51,7 +51,7 @@ crosstalk	1.2.1
 curl	5.2.0	
 data.table	1.15.0	
 data.tree	1.1.0	
-DBI	1.2.0	
+DBI	1.2.2	
 dbplyr	2.4.0	
 dbscan	1.1-12	
 DelayedArray	0.28.0	
@@ -62,7 +62,7 @@ digest	0.6.34
 docopt	0.7.1	
 doParallel	1.0.17	
 dplyr	1.1.4	
-DT	0.31	
+DT	0.32	
 dtplyr	1.3.1	
 dynamicTreeCut	1.63-1	
 e1071	1.7-14	
@@ -126,7 +126,7 @@ htmlwidgets	1.6.4
 httpuv	1.6.14	
 httr	1.4.7	
 ids	1.0.1	
-igraph	2.0.1.1	
+igraph	2.0.2	
 impute	1.76.0	
 InterpretMSSpectrum	1.3.3	0731d92accdf5db2a6d7b03c24b2d324b67b1c72
 ipred	0.9-14	
@@ -154,7 +154,7 @@ lifecycle	1.0.4
 limma	3.58.1	
 listenv	0.9.1	
 lubridate	1.9.3	
-magick	2.8.2	
+magick	2.8.3	
 magrittr	2.0.3	
 MALDIquant	1.22.2	
 MASS	7.3-60.0.1	
@@ -172,7 +172,7 @@ MLmetrics	1.1.1
 ModelMetrics	1.2.2.2	
 modelr	0.1.11	
 MS2Quant	1.1.0	46e0c77ef4961a29a73a388105eeb28e33839630
-MS2Tox	0.3.2	7e5574291c834b1ab9e50f8adf74a703188f6a6f
+MS2Tox	0.3.2	9895f745536bf7d244f2f05cef186f9fc91be602
 MsCoreUtils	1.14.1	
 MsExperiment	1.4.0	
 MsFeatures	1.10.0	
@@ -190,8 +190,8 @@ nontarget	2.2	e30221585182bc66e1f8e1113b2c1103a0f2cb56
 nontargetData	1.1	75b2a92cd549f72cc71dfe7b86bd42947d62f2c4
 numDeriv	2016.8-1.1	
 openssl	2.1.1	
-parallelly	1.36.0	
-patRoon	2.3.1	31f6f6a15df48cda66d1a9abcf2ecb3ec1e06c13
+parallelly	1.37.0	
+patRoon	2.3.1	32746bbfaa262d367ff0162c349c567c4bedd6c4
 pcaMethods	1.94.0	
 permute	0.9-7	
 pillar	1.9.0	
@@ -245,7 +245,7 @@ reactR	0.5.0
 readMzXmlData	2.8.3	
 readr	2.1.5	
 readxl	1.4.3	
-recipes	1.0.9	
+recipes	1.0.10	
 registry	0.5-1	
 rematch	2.0.0	
 rematch2	2.1.2	
@@ -289,7 +289,7 @@ stringi	1.8.3
 stringr	1.5.1	
 styler	1.10.2	
 SummarizedExperiment	1.32.0	
-survival	3.5-7	
+survival	3.5-8	
 svglite	2.1.3	
 sys	3.4.2	
 systemfonts	1.0.5