_targets.R

library(targets)
library(tarchetypes)
library(ourproj)

# create dependency on development packages (see
# https://books.ropensci.org/targets/packages.html#package-based-invalidation)
tar_option_set(packages = c("ourproj"),
               imports = c("ourproj"))

# load global objects - constants (file paths)
source("_targets_config.R")

# End this file with a list of target objects.
list(
  # Files ----------------------------------------------------------

  ## Config files ------------------------------------------------

  tar_target(TARGETS_CONFIG,
             "_targets_config.R",
             format = "file"),

  ## Raw data ----------------------------------------------------------

  tar_track_input_files(),

  tar_target(
    pcd_refset,
    list(
      PCD_REFSET_CONTENT = PCD_REFSET_CONTENT,
      PCD_REFSET_CONTENT_BY_OUTPUT = PCD_REFSET_CONTENT_BY_OUTPUT,
      PCD_RULSET_FULL_NAME_MAPPINGS = PCD_RULSET_FULL_NAME_MAPPINGS,
      PCD_SERVICE_FULL_NAME_MAPPINGS = PCD_SERVICE_FULL_NAME_MAPPINGS,
      PCD_SERVICE_OUTPUT_DESCRIPTIONS = PCD_SERVICE_OUTPUT_DESCRIPTIONS
    ) |>
      purrr::map(readr::read_tsv,
                 col_types = readr::cols(.default = "c")),
  ),

  # Quarto -------------------------------------------------------

  # target factory to render all workflowr Rmd files in analysis directory
  tar_quarto(QUARTO_WEBSITE),

  # README ------------------------------------------------------------------
  tar_render(name = README_RMD,
             path = "README.Rmd")

)