Overview

A data science project built with quarto and targets.

Setup

• Create an R script called _targets_config.R in the project root directory with the following objects and populate:

# Config file for targets pipeline. Defines global
# objects that may differ between local instances of a project.

# File paths ---------------------------------------------------------------

# input files - the suffix '_IN_PATH' indicates that ourproj should
# automatically create a target for this file/directory with `format = "file"`

## Primary Care Domain Reference Set Portal - download from
## https://digital.nhs.uk/data-and-information/data-collections-and-data-sets/data-collections/quality-and-outcomes-framework-qof/quality-and-outcome-framework-qof-business-rules/primary-care-domain-reference-set-portal
PCD_REFSET_CONTENT_IN_PATH <-
PCD_REFSET_CONTENT_BY_OUTPUT_IN_PATH <-
PCD_RULSET_FULL_NAME_MAPPINGS_IN_PATH <-
PCD_SERVICE_FULL_NAME_MAPPINGS_IN_PATH <-
PCD_SERVICE_OUTPUT_DESCRIPTIONS_IN_PATH <-

• Install required R packages, ideally using renv with renv::init(), or renv::restore() if a renv.lock file is already present.
• Run targets pipeline with tar_make() in the R console.