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Expand Down Expand Up @@ -268,7 +268,15 @@ <h1>Source code for piff.star</h1><div class="highlight"><pre>

<span class="n">localwcs</span> <span class="o">=</span> <span class="n">image</span><span class="o">.</span><span class="n">wcs</span><span class="o">.</span><span class="n">local</span><span class="p">(</span><span class="n">image_pos</span><span class="p">)</span>
<span class="n">center</span> <span class="o">=</span> <span class="n">localwcs</span><span class="o">.</span><span class="n">toWorld</span><span class="p">(</span><span class="n">mom</span><span class="o">.</span><span class="n">moments_centroid</span><span class="p">)</span> <span class="o">-</span> <span class="n">localwcs</span><span class="o">.</span><span class="n">toWorld</span><span class="p">(</span><span class="n">image_pos</span><span class="p">)</span>

<span class="c1"># Do a few sanity checks and flag likely bad fits.</span>
<span class="n">flag</span> <span class="o">=</span> <span class="n">mom</span><span class="o">.</span><span class="n">moments_status</span>
<span class="k">if</span> <span class="n">flag</span> <span class="o">!=</span> <span class="mi">0</span><span class="p">:</span>
<span class="n">flag</span> <span class="o">=</span> <span class="mi">1</span>
<span class="k">if</span> <span class="n">flux</span> <span class="o">&lt;</span> <span class="mi">0</span><span class="p">:</span>
<span class="n">flag</span> <span class="o">|=</span> <span class="mi">2</span>
<span class="k">if</span> <span class="n">center</span><span class="o">.</span><span class="n">x</span><span class="o">**</span><span class="mi">2</span> <span class="o">+</span> <span class="n">center</span><span class="o">.</span><span class="n">y</span><span class="o">**</span><span class="mi">2</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>
<span class="n">flag</span> <span class="o">|=</span> <span class="mi">4</span>

<span class="k">return</span> <span class="n">flux</span><span class="p">,</span> <span class="n">center</span><span class="o">.</span><span class="n">x</span><span class="p">,</span> <span class="n">center</span><span class="o">.</span><span class="n">y</span><span class="p">,</span> <span class="n">sigma</span><span class="p">,</span> <span class="n">shape</span><span class="o">.</span><span class="n">g1</span><span class="p">,</span> <span class="n">shape</span><span class="o">.</span><span class="n">g2</span><span class="p">,</span> <span class="n">flag</span></div>

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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>piff.star_stats &mdash; Piff 1.2.3 documentation</title><link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
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Expand Down Expand Up @@ -221,7 +221,8 @@ <h1>Source code for piff.star_stats</h1><div class="highlight"><pre>
<span class="n">logger</span> <span class="o">=</span> <span class="n">galsim</span><span class="o">.</span><span class="n">config</span><span class="o">.</span><span class="n">LoggerWrapper</span><span class="p">(</span><span class="n">logger</span><span class="p">)</span>

<span class="c1"># 6 x nplot/2 images, with each image (3.5 x 3)</span>
<span class="n">nrows</span> <span class="o">=</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">nplot</span><span class="o">+</span><span class="mi">1</span><span class="p">)</span><span class="o">//</span><span class="mi">2</span>
<span class="n">nplot</span> <span class="o">=</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">indices</span><span class="p">)</span>
<span class="n">nrows</span> <span class="o">=</span> <span class="p">(</span><span class="n">nplot</span><span class="o">+</span><span class="mi">1</span><span class="p">)</span><span class="o">//</span><span class="mi">2</span>
<span class="n">fig</span> <span class="o">=</span> <span class="n">Figure</span><span class="p">(</span><span class="n">figsize</span> <span class="o">=</span> <span class="p">(</span><span class="mi">21</span><span class="p">,</span><span class="mi">3</span><span class="o">*</span><span class="n">nrows</span><span class="p">))</span>
<span class="n">axs</span> <span class="o">=</span> <span class="n">fig</span><span class="o">.</span><span class="n">subplots</span><span class="p">(</span><span class="n">ncols</span><span class="o">=</span><span class="mi">6</span><span class="p">,</span> <span class="n">nrows</span><span class="o">=</span><span class="n">nrows</span><span class="p">,</span> <span class="n">squeeze</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>

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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>piff.stats &mdash; Piff 1.2.3 documentation</title><link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
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Expand Down Expand Up @@ -667,6 +667,18 @@ <h1>Source code for piff.stats</h1><div class="highlight"><pre>
<span class="sd"> This will compute the size and shapes of the observed stars and the PSF models</span>
<span class="sd"> and write these data to a file.</span>

<span class="sd"> The HSM adaptive momemnt measurements sometimes fail in various ways. When it does,</span>
<span class="sd"> we still output the information that we have for a star, but mark the failure with</span>
<span class="sd"> a flag: flag_truth for errors in the data measurement, flag_model for errors in the</span>
<span class="sd"> model measurement. The meaning of these flags are (treated as a bit mask):</span>

<span class="sd"> Flags:</span>

<span class="sd"> 0 = Success</span>
<span class="sd"> 1 = HSM returned a non-zero moments_status.</span>
<span class="sd"> 2 = HSM returned a negative flux.</span>
<span class="sd"> 4 = HSM&#39;s centroid moved by more than 1 pixel from the input position.</span>

<span class="sd"> The output file will include the following columns:</span>

<span class="sd"> :ra: The RA of the star in degrees. (or 0 if the wcs is not a CelestialWCS)</span>
Expand All @@ -682,8 +694,8 @@ <h1>Source code for piff.stats</h1><div class="highlight"><pre>
<span class="sd"> :g1_model: The g1 component of the PSF model.</span>
<span class="sd"> :g2_model: The g2 component of the PSF model.</span>
<span class="sd"> :reserve: Whether the star was a reserve star.</span>
<span class="sd"> :flag_truth: 0 where HSM succeeded on the observed star, -1 where it failed.</span>
<span class="sd"> :flag_model: 0 where HSM succeeded on the PSF model, -1 where it failed.</span>
<span class="sd"> :flag_truth: 0 where HSM succeeded on the observed star, &gt;0 where it failed (see above).</span>
<span class="sd"> :flag_model: 0 where HSM succeeded on the PSF model, &gt;0 where it failed (see above).</span>
<span class="sd"> &quot;&quot;&quot;</span>
<span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">file_name</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">logger</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;</span>
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