Remove environment variables for testing ckanr on Github actions #132
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| on: [push, pull_request] | |
| name: R-check | |
| jobs: | |
| R-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) - CKAN ${{ matrix.config.ckan-version }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: windows-latest, r: 'release'} | |
| - { os: macOS-latest, r: 'release'} | |
| - { os: ubuntu-latest, r: 'release', ckan-version: 2.7} | |
| - { os: ubuntu-latest, r: 'release', ckan-version: 2.8} | |
| - { os: ubuntu-latest, r: 'release', ckan-version: 2.9} | |
| - { os: ubuntu-latest, r: 'devel', ckan-version: 2.9} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| CKANR_TEST_BEHAVIOUR: SKIP | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| R_KEEP_PKG_SOURCE: yes | |
| CKAN_VERSION: ${{ matrix.config.ckan-version }} # for docker compose up | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Configure /etc/hosts | |
| run: sudo echo "127.0.0.1 ckan" | sudo tee -a /etc/hosts | |
| if: matrix.config.os == 'ubuntu-latest' | |
| - name: Start CKAN | |
| run: docker compose up -d | |
| if: matrix.config.os == 'ubuntu-latest' | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| any::rcmdcheck | |
| any::covr | |
| needs: | | |
| check | |
| coverage | |
| - name: Generate CKAN API token | |
| run: | | |
| echo "TEST_API_KEY=$(docker exec ckan ckan user token add ckan_admin dev_token | sed 's/API Token created://' | tr -d '\n\t')" >> $GITHUB_ENV | |
| if: matrix.config.ckan-version == '2.9' && matrix.config.os == 'ubuntu-latest' | |
| - name: Generate CKAN API key | |
| run: | | |
| echo "TEST_API_KEY"=$(docker exec ckan paster --plugin=ckan user ckan_admin | grep -o -P '(?<=apikey=).*(?= created)') >> $GITHUB_ENV | |
| if: matrix.config.ckan-version != '2.9' && matrix.config.os == 'ubuntu-latest' | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "error", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| if: matrix.config.os == 'ubuntu-latest' && matrix.config.r == 'release' && matrix.config.ckan-version == '2.8' | |
| run: | | |
| covr::codecov( | |
| quiet = FALSE, | |
| clean = FALSE, | |
| install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package") | |
| ) | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: | | |
| ## -------------------------------------------------------------------- | |
| find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload test results | |
| if: failure() && matrix.config.os == 'ubuntu-latest' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-test-failures | |
| path: ${{ runner.temp }}/package |