Going to CRAN with v0.6.4.

rorynolan · Jul 8, 2019 · b8e2597 · b8e2597
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: detrendr
 Type: Package
 Title: Detrend Images
-Version: 0.6.3
+Version: 0.6.4
 Authors@R: c(
     person("Rory", "Nolan", email = "rorynoolan@gmail.com", 
            role = c("aut", "cre"), 
@@ -36,7 +36,7 @@ Imports:
     doParallel,
     iterators,
     purrr,
-    ijtiff (>= 2.0.0),
+    ijtiff (>= 2.0.2),
     autothresholdr (>= 1.3.3),
     rlang (>= 0.3.3),
     stringr (>= 1.2.0),

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,9 @@
+# `detrendr` 0.6.4
+
+## BUG FIXES
+* Insist on latest, bug-fixed `ijtiff` v2.0.2.
+
+
 # `detrendr` 0.6.3
 
 ## BUG FIXES

diff --git a/codemeta.json b/codemeta.json
@@ -14,7 +14,7 @@
   ],
   "issueTracker": "https://www.github.com/rorynolan/detrendr/issues",
   "license": "https://spdx.org/licenses/BSD-3-Clause",
-  "version": "0.6.3",
+  "version": "0.6.4",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
@@ -377,7 +377,7 @@
       "@type": "SoftwareApplication",
       "identifier": "ijtiff",
       "name": "ijtiff",
-      "version": ">= 2.0.0",
+      "version": ">= 2.0.2",
       "provider": {
         "@id": "https://cran.r-project.org",
         "@type": "Organization",
@@ -545,7 +545,7 @@
   ],
   "releaseNotes": "https://github.com/rorynolan/detrendr/blob/master/NEWS.md",
   "readme": "https://github.com/rorynolan/detrendr/blob/master/README.md",
-  "fileSize": "525.439KB",
+  "fileSize": "526.52KB",
   "contIntegration": [
     "https://travis-ci.org/rorynolan/detrendr",
     "https://ci.appveyor.com/project/rorynolan/detrendr",

diff --git a/revdep/README.md b/revdep/README.md
@@ -10,13 +10,13 @@
 |collate  |en_GB.UTF-8                  |
 |ctype    |en_GB.UTF-8                  |
 |tz       |Europe/London                |
-|date     |2019-06-21                   |
+|date     |2019-07-08                   |
 
 # Dependencies
 
 |package  |old   |new   |Δ  |
 |:--------|:-----|:-----|:--|
-|detrendr |0.6.2 |0.6.2 |NA |
+|detrendr |0.6.3 |0.6.4 |*  |
 
 # Revdeps
 
diff --git a/revdep/checks.noindex/libraries.csv b/revdep/checks.noindex/libraries.csv
@@ -1,2 +1,2 @@
 package,old,new,delta
-detrendr,0.6.2,0.6.2,
+detrendr,0.6.3,0.6.4,*
diff --git a/revdep/checks.noindex/nandb/nandb_2.0.2.tar.gz b/revdep/checks.noindex/nandb/nandb_2.0.2.tar.gz
diff --git a/revdep/checks.noindex/nandb/nandb_2.0.3.tar.gz b/revdep/checks.noindex/nandb/nandb_2.0.3.tar.gz
diff --git a/revdep/checks.noindex/nandb/new/libraries.txt b/revdep/checks.noindex/nandb/new/libraries.txt
@@ -1,16 +1,16 @@
 Library: /Users/rnolan/Dropbox/DPhil/Misc/RStuff/detrendr/revdep/library.noindex/detrendr/new
-detrendr (0.6.2)
+detrendr (0.6.4)
 
 Library: /Users/rnolan/Dropbox/DPhil/Misc/RStuff/detrendr/revdep/library.noindex/nandb
 abind          (1.4-5)
 askpass        (1.1)
 assertthat     (0.2.1)
-autothresholdr (1.3.3)
+autothresholdr (1.3.4)
 backports      (1.1.4)
 base64enc      (0.1-3)
 BBmisc         (1.11)
 BH             (1.69.0-1)
-checkmate      (1.9.3)
+checkmate      (1.9.4)
 cli            (1.1.0)
 clipr          (0.6.0)
 codetools      (0.2-16)
@@ -19,12 +19,13 @@ commonmark     (1.7)
 covr           (3.2.1)
 crayon         (1.3.4)
 curl           (3.3)
-digest         (0.6.19)
+digest         (0.6.20)
 doParallel     (1.0.14)
-dplyr          (0.8.1)
+dplyr          (0.8.3)
+ellipsis       (0.2.0.1)
 evaluate       (0.14)
 fansi          (0.4.0)
-filesstrings   (3.1.4)
+filesstrings   (3.1.5)
 foreach        (1.4.4)
 fs             (1.3.1)
 ggplot2        (3.2.0)
@@ -36,7 +37,7 @@ hms            (0.4.2)
 htmltools      (0.3.6)
 httr           (1.4.0)
 hunspell       (3.0)
-ijtiff         (2.0.0)
+ijtiff         (2.0.2)
 iterators      (1.0.10)
 jsonlite       (1.6)
 knitr          (1.23)
@@ -55,42 +56,42 @@ nlme           (3.1-140)
 openssl        (1.4)
 ore            (1.6.2)
 pacman         (0.5.1)
-pillar         (1.4.1)
+pillar         (1.4.2)
 pkgconfig      (2.0.2)
 plogr          (0.2.0)
 plyr           (1.8.4)
 praise         (1.0.0)
-processx       (3.3.1)
+processx       (3.4.0)
 ps             (1.3.0)
 purrr          (0.3.2)
 R6             (2.4.0)
 RColorBrewer   (1.1-2)
 Rcpp           (1.0.1)
 RcppParallel   (4.4.3)
 readr          (1.3.1)
-remotes        (2.0.4)
+remotes        (2.1.0)
 reshape2       (1.4.3)
 rex            (1.1.2)
-rlang          (0.3.4)
+rlang          (0.4.0)
 rmarkdown      (1.13)
 scales         (1.0.0)
 sigmoid        (0.3.0)
 spelling       (2.1)
-strex          (1.1.0)
+strex          (1.1.1)
 stringi        (1.4.3)
 stringr        (1.4.0)
 sys            (3.2)
 testthat       (2.1.1)
 tibble         (2.1.3)
 tidyr          (0.8.3)
 tidyselect     (0.2.5)
-tinytex        (0.13)
+tinytex        (0.14)
 utf8           (1.1.4)
 vctrs          (0.1.0)
 viridis        (0.5.1)
 viridisLite    (0.3.0)
 withr          (2.1.2)
-xfun           (0.7)
+xfun           (0.8)
 xml2           (1.2.0)
 yaml           (2.2.0)
 zeallot        (0.1.0)
diff --git a/revdep/checks.noindex/nandb/new/nandb.Rcheck/00check.log b/revdep/checks.noindex/nandb/new/nandb.Rcheck/00check.log
@@ -5,7 +5,7 @@
 * using options ‘--no-manual --no-build-vignettes’
 * checking for file ‘nandb/DESCRIPTION’ ... OK
 * checking extension type ... Package
-* this is package ‘nandb’ version ‘2.0.2’
+* this is package ‘nandb’ version ‘2.0.3’
 * package encoding: UTF-8
 * checking package namespace information ... OK
 * checking package dependencies ... OK
@@ -31,9 +31,7 @@
 * checking whether the package can be unloaded cleanly ... OK
 * checking whether the namespace can be loaded with stated dependencies ... OK
 * checking whether the namespace can be unloaded cleanly ... OK
-* checking dependencies in R code ... NOTE
-Namespace in Imports field not imported from: ‘utils’
-  All declared Imports should be used.
+* checking dependencies in R code ... OK
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
@@ -61,4 +59,4 @@ Namespace in Imports field not imported from: ‘utils’
 * checking running R code from vignettes ... NONE
 * checking re-building of vignette outputs ... SKIPPED
 * DONE
-Status: 1 NOTE
+Status: OK
diff --git a/revdep/checks.noindex/nandb/new/nandb.Rcheck/nandb-Ex.Rout b/revdep/checks.noindex/nandb/new/nandb.Rcheck/nandb-Ex.Rout
@@ -555,7 +555,7 @@ integer type. Reading 1 channel and 50 frames . . .
 > cleanEx()
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  7.045 0.5 8.111 0.117 0.107 
+Time elapsed:  7.124 0.47 8.162 0.101 0.102 
 > grDevices::dev.off()
 null device 
           1 

diff --git a/revdep/checks.noindex/nandb/new/nandb.Rcheck/nandb-Ex.pdf b/revdep/checks.noindex/nandb/new/nandb.Rcheck/nandb-Ex.pdf
diff --git a/revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/spelling.Rout b/revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/spelling.Rout
@@ -25,4 +25,4 @@ All Done!
 > 
 > proc.time()
    user  system elapsed 
-  1.173   0.389   1.558 
+  1.326   0.259   1.634 
diff --git a/revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/testthat.Rout b/revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/testthat.Rout
@@ -19,9 +19,9 @@ Type 'q()' to quit R.
 > library(nandb)
 > 
 > test_check("nandb")
-══ testthat results  ════════════════════════════════════════════════════════════════════════════
+══ testthat results  ═════════════════════════════════════════════════════════════════════════════
 OK: 155 SKIPPED: 0 WARNINGS: 0 FAILED: 0
 > 
 > proc.time()
    user  system elapsed 
- 43.466  14.025  58.774 
+ 43.719  14.481  60.187 
diff --git a/revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/testthat/test-number.R b/revdep/checks.noindex/nandb/new/nandb.Rcheck/tests/testthat/test-number.R
@@ -225,6 +225,16 @@ test_that("number_timeseries works", {
     c("auto=0", "auto=5029"),
     c("auto=5363", "auto=0")
   ) # rhub ubuntu
+  ans5 <- stringr::str_replace(
+    ans0,
+    c("auto=0", "auto=5029"),
+    c("auto=574", "auto=0")
+  ) # CRAN solaris
+  ans6 <- stringr::str_replace(
+    ans0,
+    c("auto=0", "auto=5029"),
+    c("auto=5214", "auto=0")
+  ) # CRAN Windows oldrel
   lfnts <- list.files("number_timeseries")
   if (all(lfnts %in% ans0)) {
     expect_true(all(lfnts %in% ans0))
@@ -236,10 +246,14 @@ test_that("number_timeseries works", {
     expect_true(all(lfnts %in% ans3))
   } else if (all(lfnts %in% ans4)) {
     expect_true(all(lfnts %in% ans4))
+  } else if (all(lfnts %in% ans5)) {
+    expect_true(all(lfnts %in% ans5))
+  } else if (all(lfnts %in% ans6)) {
+    expect_true(all(lfnts %in% ans6))
   } else {
     expect_equal(sort(lfnts), sort(ans0))
   }
-  suppressWarnings(file.remove(list.files())) # cleanup
+  suppressWarnings(file.remove(list.files(pattern = "\\.tiff*"))) # cleanup
   filesstrings::dir.remove("number_timeseries", "tempwithintemp")
   setwd(cwd)
 })
diff --git a/revdep/checks.noindex/nandb/old/libraries.txt b/revdep/checks.noindex/nandb/old/libraries.txt
@@ -1,16 +1,16 @@
 Library: /Users/rnolan/Dropbox/DPhil/Misc/RStuff/detrendr/revdep/library.noindex/detrendr/old
-detrendr (0.6.2)
+detrendr (0.6.3)
 
 Library: /Users/rnolan/Dropbox/DPhil/Misc/RStuff/detrendr/revdep/library.noindex/nandb
 abind          (1.4-5)
 askpass        (1.1)
 assertthat     (0.2.1)
-autothresholdr (1.3.3)
+autothresholdr (1.3.4)
 backports      (1.1.4)
 base64enc      (0.1-3)
 BBmisc         (1.11)
 BH             (1.69.0-1)
-checkmate      (1.9.3)
+checkmate      (1.9.4)
 cli            (1.1.0)
 clipr          (0.6.0)
 codetools      (0.2-16)
@@ -19,12 +19,13 @@ commonmark     (1.7)
 covr           (3.2.1)
 crayon         (1.3.4)
 curl           (3.3)
-digest         (0.6.19)
+digest         (0.6.20)
 doParallel     (1.0.14)
-dplyr          (0.8.1)
+dplyr          (0.8.3)
+ellipsis       (0.2.0.1)
 evaluate       (0.14)
 fansi          (0.4.0)
-filesstrings   (3.1.4)
+filesstrings   (3.1.5)
 foreach        (1.4.4)
 fs             (1.3.1)
 ggplot2        (3.2.0)
@@ -36,7 +37,7 @@ hms            (0.4.2)
 htmltools      (0.3.6)
 httr           (1.4.0)
 hunspell       (3.0)
-ijtiff         (2.0.0)
+ijtiff         (2.0.2)
 iterators      (1.0.10)
 jsonlite       (1.6)
 knitr          (1.23)
@@ -55,42 +56,42 @@ nlme           (3.1-140)
 openssl        (1.4)
 ore            (1.6.2)
 pacman         (0.5.1)
-pillar         (1.4.1)
+pillar         (1.4.2)
 pkgconfig      (2.0.2)
 plogr          (0.2.0)
 plyr           (1.8.4)
 praise         (1.0.0)
-processx       (3.3.1)
+processx       (3.4.0)
 ps             (1.3.0)
 purrr          (0.3.2)
 R6             (2.4.0)
 RColorBrewer   (1.1-2)
 Rcpp           (1.0.1)
 RcppParallel   (4.4.3)
 readr          (1.3.1)
-remotes        (2.0.4)
+remotes        (2.1.0)
 reshape2       (1.4.3)
 rex            (1.1.2)
-rlang          (0.3.4)
+rlang          (0.4.0)
 rmarkdown      (1.13)
 scales         (1.0.0)
 sigmoid        (0.3.0)
 spelling       (2.1)
-strex          (1.1.0)
+strex          (1.1.1)
 stringi        (1.4.3)
 stringr        (1.4.0)
 sys            (3.2)
 testthat       (2.1.1)
 tibble         (2.1.3)
 tidyr          (0.8.3)
 tidyselect     (0.2.5)
-tinytex        (0.13)
+tinytex        (0.14)
 utf8           (1.1.4)
 vctrs          (0.1.0)
 viridis        (0.5.1)
 viridisLite    (0.3.0)
 withr          (2.1.2)
-xfun           (0.7)
+xfun           (0.8)
 xml2           (1.2.0)
 yaml           (2.2.0)
 zeallot        (0.1.0)
diff --git a/revdep/checks.noindex/nandb/old/nandb.Rcheck/00check.log b/revdep/checks.noindex/nandb/old/nandb.Rcheck/00check.log
@@ -5,7 +5,7 @@
 * using options ‘--no-manual --no-build-vignettes’
 * checking for file ‘nandb/DESCRIPTION’ ... OK
 * checking extension type ... Package
-* this is package ‘nandb’ version ‘2.0.2’
+* this is package ‘nandb’ version ‘2.0.3’
 * package encoding: UTF-8
 * checking package namespace information ... OK
 * checking package dependencies ... OK
@@ -31,9 +31,7 @@
 * checking whether the package can be unloaded cleanly ... OK
 * checking whether the namespace can be loaded with stated dependencies ... OK
 * checking whether the namespace can be unloaded cleanly ... OK
-* checking dependencies in R code ... NOTE
-Namespace in Imports field not imported from: ‘utils’
-  All declared Imports should be used.
+* checking dependencies in R code ... OK
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
@@ -61,4 +59,4 @@ Namespace in Imports field not imported from: ‘utils’
 * checking running R code from vignettes ... NONE
 * checking re-building of vignette outputs ... SKIPPED
 * DONE
-Status: 1 NOTE
+Status: OK
diff --git a/revdep/checks.noindex/nandb/old/nandb.Rcheck/nandb-Ex.Rout b/revdep/checks.noindex/nandb/old/nandb.Rcheck/nandb-Ex.Rout
@@ -555,7 +555,7 @@ integer type. Reading 1 channel and 50 frames . . .
 > cleanEx()
 > options(digits = 7L)
 > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
-Time elapsed:  6.483 0.471 8.104 0.111 0.101 
+Time elapsed:  7.156 0.487 8.656 0.097 0.092 
 > grDevices::dev.off()
 null device 
           1 

diff --git a/revdep/checks.noindex/nandb/old/nandb.Rcheck/nandb-Ex.pdf b/revdep/checks.noindex/nandb/old/nandb.Rcheck/nandb-Ex.pdf
diff --git a/revdep/checks.noindex/nandb/old/nandb.Rcheck/tests/spelling.Rout b/revdep/checks.noindex/nandb/old/nandb.Rcheck/tests/spelling.Rout
@@ -25,4 +25,4 @@ All Done!
 > 
 > proc.time()
    user  system elapsed 
-  1.122   0.387   1.512 
+  1.301   0.255   1.570