GUI: Analysis tab

aydin/analysis/demo/demo_fsc.py

@@ -1,12 +1,10 @@
 # flake8: noqa
-# import pytest
-import pytest
 import matplotlib.pyplot as plt
 from numpy.random.mtrand import normal
 
 from aydin.analysis.fsc import fsc
 from aydin.io.datasets import camera, normalise
-from aydin.util.log.log import lprint, Log
+from aydin.util.log.log import Log
 
 
 def demo_fsc(display: bool = True):

aydin/gui/_qt/custom_widgets/matplotlib_widget.py

@@ -0,0 +1,10 @@
+from matplotlib.backends.backend_qtagg import FigureCanvasQTAgg
+from matplotlib.figure import Figure
+
+
+class MatplotlibWidget(FigureCanvasQTAgg):
+
+    def __init__(self, parent=None, width=5, height=4, dpi=100):
+        fig = Figure(figsize=(width, height), dpi=dpi)
+        self.axes = fig.add_subplot(111)
+        super(MatplotlibWidget, self).__init__(fig)

aydin/gui/main_page.py

@@ -20,6 +20,7 @@
 from aydin.gui._qt.custom_widgets.program_flow_diagram import QProgramFlowDiagramWidget
 from aydin.gui._qt.job_runners.denoise_job_runner import DenoiseJobRunner
 from aydin.gui.tabs.data_model import DataModel
+from aydin.gui.tabs.qt.analysis import AnalysisTab
 from aydin.gui.tabs.qt.dimensions import DimensionsTab
 from aydin.gui.tabs.qt.denoise import DenoiseTab
 from aydin.gui.tabs.qt.files import FilesTab
@@ -66,6 +67,7 @@ def __init__(self, parent, threadpool, status_bar):
             "Denoising Crop": DenoisingCroppingTab(self),
             "Pre/Post-Processing": ProcessingTab(self),
             "Denoise": DenoiseTab(self),
+            "Analysis": AnalysisTab(self),
         }
 
         self.data_model = DataModel(self)

aydin/gui/tabs/qt/analysis.py

@@ -0,0 +1,68 @@
+from napari._qt.qt_viewer import QtViewer
+from napari.components import ViewerModel
+from qtpy.QtCore import Qt
+from qtpy.QtWidgets import QWidget, QVBoxLayout, QHBoxLayout, QLabel
+
+from aydin.gui._qt.custom_widgets.horizontal_line_break_widget import (
+    QHorizontalLineBreakWidget,
+)
+from aydin.gui._qt.custom_widgets.matplotlib_widget import MatplotlibWidget
+
+
+class AnalysisTab(QWidget):
+    """
+    Analysis Tab
+    """
+
+    def __init__(self, parent):
+        super(QWidget, self).__init__(parent)
+        self.parent = parent
+
+        self.tab_layout = QVBoxLayout()
+
+        # Blind spots
+        self.blind_spot_label = QLabel("blind spots: []")
+        self.tab_layout.addWidget(self.blind_spot_label)
+
+        self.tab_layout.addWidget(QHorizontalLineBreakWidget(self))
+
+        # SNR estimate
+        self.snr_estimate_label = QLabel("snr_estimate: ")
+        self.tab_layout.addWidget(self.snr_estimate_label)
+
+        self.tab_layout.addWidget(QHorizontalLineBreakWidget(self))
+
+        # Resolution estimate
+        self.resolution_estimate_label = QLabel("frequency resolution estimate: ")
+        self.tab_layout.addWidget(self.resolution_estimate_label)
+
+        self.tab_layout.addWidget(QHorizontalLineBreakWidget(self))
+
+        # FSC section
+        self.fsc_label = QLabel("Fourier Shell Correlations: ")
+        self.tab_layout.addWidget(self.fsc_label)
+
+        self.matplotlib_widget = MatplotlibWidget(self, width=5, height=40, dpi=100)
+
+        self.tab_layout.addWidget(self.matplotlib_widget)
+
+        self.tab_layout.addWidget(QHorizontalLineBreakWidget(self))
+
+        # Noise Floor section
+        self.noise_floor_label = QLabel("calculated noise floor: ")
+        self.tab_layout.addWidget(self.noise_floor_label)
+
+        self.noise_floor_viewers_layout = QHBoxLayout()
+
+        self.viewer_model1 = ViewerModel()
+        self.viewer_qt1 = QtViewer(self.viewer_model1, show_welcome_screen=False)
+        self.noise_floor_viewers_layout.addWidget(self.viewer_qt1)
+
+        self.viewer_model2 = ViewerModel()
+        self.viewer_qt2 = QtViewer(self.viewer_model2, show_welcome_screen=False)
+        self.noise_floor_viewers_layout.addWidget(self.viewer_qt2)
+
+        self.tab_layout.addLayout(self.noise_floor_viewers_layout)
+
+        self.tab_layout.setAlignment(Qt.AlignTop)
+        self.setLayout(self.tab_layout)