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Transparent logo appropriate for light/dark themes
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rrwick committed Jul 26, 2021
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<p align="center"><img src="images/logo.png" alt="Polypolish" width="70%"></p>
<p align="center"><img src="images/logo_transparent.png" alt="Polypolish" width="70%"></p>

Polypolish is a tool for polishing genome assemblies with short reads. Unlike other tools in this category, Polypolish uses SAM files where each read has been aligned to _all_ possible locations (not just a single best location). This allows it to repair errors in repeat regions that other alignment-based polishers cannot fix.

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