Merge pull request #30 from rse-ops/add/mpi-graph

add mpigraph prototype

mpigraph/Dockerfile

@@ -0,0 +1,31 @@
+ARG tag=jammy
+FROM ubuntu:${tag}
+ENV DEBIAN_FRONTEND=noninteractive
+
+# mpirun --map-by node -np 2 --allow-run-as-root ./mpiGraph 1048576 10 10 > mpiGraph.out
+# ./crunch_mpiGraph mpiGraph.out
+# firefox file:///path/to/mpiGraph.out_html/index.html
+
+WORKDIR /opt/
+RUN apt-get update && \
+    apt-get install -y gfortran git curl wget g++ build-essential \
+    openmpi-bin openmpi-doc libopenmpi-dev && \
+    wget https://docs.it4i.cz/src/ompi/ompi.tar.gz && \
+    tar -xzvf ompi.tar.gz && \
+    rm ompi/Makefile
+
+# Python - instead of a system python we install mamba
+RUN /bin/bash -c "curl -L https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh > mambaforge.sh && bash mambaforge.sh -b -p /opt/conda && rm mambaforge.sh"
+ENV PATH=/opt/conda/bin:$PATH
+
+WORKDIR /opt/ompi
+
+# We can't build java ones
+ENV PATH=/opt/ompi:$PATH
+COPY ./Makefile ./Makefile
+RUN make
+
+RUN git clone https://github.com/LLNL/mpiGraph /opt/mpigraph
+WORKDIR /opt/mpigraph
+RUN make
+ENV PATH=/opt/mpigraph:$PATH

mpigraph/Makefile

@@ -0,0 +1,147 @@
+#
+# Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
+#                         University Research and Technology
+#                         Corporation.  All rights reserved.
+# Copyright (c) 2004-2018 The University of Tennessee and The University
+#                         of Tennessee Research Foundation.  All rights
+#                         reserved.
+# Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
+#                         University of Stuttgart.  All rights reserved.
+# Copyright (c) 2004-2005 The Regents of the University of California.
+#                         All rights reserved.
+# Copyright (c) 2006-2007 Sun Microsystems, Inc.  All rights reserved.
+# Copyright (c) 2011-2016 Cisco Systems, Inc.  All rights reserved.
+# Copyright (c) 2012      Los Alamos National Security, Inc.  All rights reserved.
+# Copyright (c) 2013      Mellanox Technologies, Inc.  All rights reserved.
+# Copyright (c) 2017-2018 Research Organization for Information Science
+#                         and Technology (RIST). All rights reserved.
+# $COPYRIGHT$
+#
+# Additional copyrights may follow
+#
+# $HEADER$
+#
+
+# Use the Open MPI-provided wrapper compilers.
+
+MPICC = mpicc
+MPICXX = mpic++
+MPIFC = mpifort
+MPIJAVAC = mpijavac
+SHMEMCC = shmemcc
+SHMEMCXX = shmemc++
+SHMEMFC = shmemfort
+
+# Using -g is not necessary, but it is helpful for example programs,
+# especially if users want to examine them with debuggers.  Note that
+# gmake requires the CXXFLAGS macro, while other versions of make
+# (such as Sun's make) require the CCFLAGS macro.
+
+CFLAGS += -g
+CXXFLAGS += -g
+CCFLAGS += -g
+FCFLAGS += -g
+
+# Example programs to build
+
+EXAMPLES = \
+	 hello_c \
+	 hello_cxx \
+	 hello_mpifh \
+	 hello_usempi \
+	 hello_usempif08 \
+	 hello_oshmem \
+	 hello_oshmemcxx \
+	 hello_oshmemfh \
+	 ring_c \
+	 ring_cxx \
+	 ring_mpifh \
+	 ring_usempi \
+	 ring_usempif08 \
+	 ring_oshmem \
+	 ring_oshmemfh \
+	 connectivity_c \
+	 oshmem_shmalloc \
+	 oshmem_circular_shift \
+	 oshmem_max_reduction \
+	 oshmem_strided_puts \
+	 oshmem_symmetric_data \
+	 spc_example
+
+
+# Default target.  Always build the C MPI examples.  Only build the
+# others if we have the appropriate Open MPI / OpenSHMEM language
+# bindings.
+
+all: hello_c ring_c connectivity_c spc_example
+	$(MAKE) mpi;
+
+# MPI examples
+
+mpi:
+	$(MAKE) hello_cxx ring_cxx;
+	$(MAKE) hello_mpifh ring_mpifh;
+	$(MAKE) hello_usempi ring_usempi;
+
+# The usual "clean" target
+
+clean:
+	rm -f $(EXAMPLES) *~ *.o
+
+# Don't rely on default rules for the Fortran and Java examples
+
+hello_c: hello_c.c
+	$(MPICC) $(CFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+ring_c: ring_c.c
+	$(MPICC) $(CFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+connectivity_c: connectivity_c.c
+	$(MPICC) $(CFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+spc_example: spc_example.c
+	$(MPICC) $(CFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+
+hello_cxx: hello_cxx.cc
+	$(MPICXX) $(CXXFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+ring_cxx: ring_cxx.cc
+	$(MPICXX) $(CXXFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+
+hello_mpifh: hello_mpifh.f
+	$(MPIFC) $(FCFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+ring_mpifh: ring_mpifh.f
+	$(MPIFC) $(FCFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+
+hello_usempi: hello_usempi.f90
+	$(MPIFC) $(FCFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+ring_usempi: ring_usempi.f90
+	$(MPIFC) $(FCFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+
+hello_usempif08: hello_usempif08.f90
+	$(MPIFC) $(FCFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+ring_usempif08: ring_usempif08.f90
+	$(MPIFC) $(FCFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+
+hello_oshmem: hello_oshmem_c.c
+	$(SHMEMCC) $(CFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+hello_oshmemcxx: hello_oshmem_cxx.cc
+	$(SHMEMCXX) $(CXXFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+hello_oshmemfh: hello_oshmemfh.f90
+	$(SHMEMFC) $(FCFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+
+ring_oshmem: ring_oshmem_c.c
+	$(SHMEMCC) $(CFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+ring_oshmemfh: ring_oshmemfh.f90
+	$(SHMEMFC) $(FCFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+
+oshmem_shmalloc: oshmem_shmalloc.c
+	$(SHMEMCC) $(CFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+
+oshmem_circular_shift: oshmem_circular_shift.c
+	$(SHMEMCC) $(CFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+
+oshmem_max_reduction: oshmem_max_reduction.c
+	$(SHMEMCC) $(CFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+
+oshmem_strided_puts: oshmem_strided_puts.c
+	$(SHMEMCC) $(CFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@
+
+oshmem_symmetric_data: oshmem_symmetric_data.c
+	$(SHMEMCC) $(CFLAGS) $(LDFLAGS) $? $(LDLIBS) -o $@

mpigraph/uptodate.yaml

@@ -0,0 +1,6 @@
+dockerbuild:
+  build_args:
+    tag:
+      key: tag
+      versions:
+       - jammy