Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Cannot install Debian packages in trestletech/plumber #459

Closed
ghost opened this issue Jul 10, 2019 · 4 comments · Fixed by #589
Closed

Cannot install Debian packages in trestletech/plumber #459

ghost opened this issue Jul 10, 2019 · 4 comments · Fixed by #589
Labels
difficulty: intermediate Enterprising community members could help effort: low < 1 day of work priority: high Must be fixed before next release theme: docker type: bug Maintainers have validated that it is a real bug in the project code
Milestone

Comments

@ghost
Copy link

ghost commented Jul 10, 2019

Installing curl Running apt-get update in a Dockerfile based on trestletech/plumber fails with the following error:

E: Repository 'http://cdn-fastly.deb.debian.org/debian testing InRelease' changed its 'Codename' value from 'buster' to 'bullseye'
The command '/bin/sh -c apt-get update && apt-get install -t unstable -y curl' returned a non-zero code: 10

Maybe a rebuild with a more recent version of debian/testing fixes the issue. However, I think the deeper issue is that a Docker image based on debian/testing will always be prone to instabilities. It would be great if we could have a trestletech/plumber image based on rocker/r-ver.

Example application or steps to reproduce the problem

Dockerfile:

FROM trestletech/plumber
RUN apt-get update \
&& apt-get install -t unstable -y curl
RUN apt-get install -y libxml2-dev
COPY . /api
EXPOSE 8000
ENTRYPOINT ["R", "-e", "pr <- plumber::plumb(commandArgs()[4]); pr$run(host='0.0.0.0', port=8000, swagger=TRUE)"]
CMD ["/api/plumber.R"]

Describe the problem in detail

$ docker build .
Step 1/8 : FROM trestletech/plumber
 ---> f9aa6e6553fb
Step 2/8 : RUN apt-get update && apt-get install -t unstable -y curl
 ---> Running in f8d9f02f20ac
Get:1 http://cdn-fastly.deb.debian.org/debian testing InRelease [117 kB]
Get:2 http://cdn-fastly.deb.debian.org/debian sid InRelease [149 kB]
Get:3 http://cdn-fastly.deb.debian.org/debian sid/main amd64 Packages.diff/Index [27.9 kB]
Ign:3 http://cdn-fastly.deb.debian.org/debian sid/main amd64 Packages.diff/Index
Get:4 http://cdn-fastly.deb.debian.org/debian sid/main amd64 Packages [8,389 kB]
Reading package lists...
E: Repository 'http://cdn-fastly.deb.debian.org/debian testing InRelease' changed its 'Codename' value from 'buster' to 'bullseye'
The command '/bin/sh -c apt-get update && apt-get install -t unstable -y curl' returned a non-zero code: 100
@ghost
Copy link
Author

ghost commented Jul 10, 2019

As a workaround, we are currently doing this:

FROM trestletech/plumber
RUN echo 'deb http://deb.debian.org/debian bullseye main' > /etc/apt/sources.list
RUN apt-get update

@schloerke schloerke added difficulty: intermediate Enterprising community members could help effort: low < 1 day of work priority: high Must be fixed before next release type: bug Maintainers have validated that it is a real bug in the project code labels Jul 10, 2019
@schloerke schloerke added this to the v0.5.0 - Next CRAN release milestone Jul 10, 2019
threadingdata added a commit to threadingdata/plumberAPI that referenced this issue Aug 26, 2019
@mskyttner
Copy link

Here is a Dockerfile for rstudio/plumber based on r-ver:3.6.1:

https://gist.github.com/mskyttner/71948117bbadc16be3cec5f64f18a839

@mskyttner
Copy link

That Dockerfile should take care of issues #425, #457, #459 and includes usage instructions inlined as comments at the end of it.

@MarkEdmondson1234
Copy link

MarkEdmondson1234 commented Jan 7, 2020

Just ran into this, thanks for the solution.

Is there an ETA when the official Docker image will be updated?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
difficulty: intermediate Enterprising community members could help effort: low < 1 day of work priority: high Must be fixed before next release theme: docker type: bug Maintainers have validated that it is a real bug in the project code
Projects
None yet
Development

Successfully merging a pull request may close this issue.

3 participants