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Functions for nice tree decomposition and its labelling #7218

Functions for nice tree decomposition and its labelling

Functions for nice tree decomposition and its labelling #7218

Workflow file for this run

name: Build documentation
on:
pull_request:
merge_group:
push:
branches:
- master
- develop
workflow_dispatch:
# Allow to run manually
concurrency:
# Cancel previous runs of this workflow for the same branch
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
jobs:
get_ci_fixes:
runs-on: ubuntu-latest
steps:
- name: Checkout
id: checkout
uses: actions/checkout@v4
- name: Merge CI fixes from sagemath/sage
run: |
.ci/merge-fixes.sh
env:
GH_TOKEN: ${{ github.token }}
- name: Store CI fixes in upstream artifact
run: |
mkdir -p upstream
if git format-patch --stdout test_base > ci_fixes.patch; then
cp ci_fixes.patch upstream/
fi
- uses: actions/upload-artifact@v3
with:
path: upstream
name: upstream
build-docs:
runs-on: ubuntu-latest
container: ghcr.io/sagemath/sage/sage-ubuntu-focal-standard-with-targets:dev
needs: [get_ci_fixes]
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Update system packages
run: |
apt-get update && apt-get install -y git zip
- name: Add prebuilt tree as a worktree
id: worktree
run: |
git config --global --add safe.directory $(pwd)
git config --global user.email "ci-sage@example.com"
git config --global user.name "Build & Test workflow"
# mathjax path in old doc
mathjax_path_from=$(SAGE_USE_CDNS=no /sage/sage -python -c "from sage_docbuild.conf import mathjax_path; print(mathjax_path)")
.ci/retrofit-worktree.sh worktree-image /sage
# mathjax path in new doc
mathjax_path_to=$(SAGE_USE_CDNS=yes /sage/sage -python -c "from sage_docbuild.conf import mathjax_path; print(mathjax_path)")
new_version=$(cat src/VERSION.txt)
# Wipe out chronic diffs between old doc and new doc
(cd /sage/local/share/doc/sage/html && \
find . -name "*.html" | xargs sed -i -e '/class="sidebar-brand-text"/ s/Sage [0-9a-z.]* /Sage '"$new_version"' /' \
-e 's;'"$mathjax_path_from"';'"$mathjax_path_to"';' \
-e '\;<script type="application/vnd\.jupyter\.widget-state+json">;,\;</script>; d')
# Create git repo from old doc
(cd /sage/local/share/doc/sage/html && \
git init && \
(echo "*.svg binary"; echo "*.pdf binary") >> .gitattributes && \
(echo ".buildinfo"; echo '*.inv'; echo '.git*'; echo '*.svg'; echo '*.pdf'; echo '*.png'; echo 'searchindex.js') > .gitignore; \
git add -A && git commit --quiet -m "old")
- name: Download upstream artifact
uses: actions/download-artifact@v3
with:
path: upstream
name: upstream
- name: Apply CI fixes from sagemath/sage
# After applying the fixes, make sure all changes are marked as uncommitted changes.
run: |
if [ -r upstream/ci_fixes.patch ]; then
(cd worktree-image && git commit -q -m "current changes" --allow-empty -a && git am; git reset --quiet old; git add -N .) < upstream/ci_fixes.patch
fi
- name: Incremental build
id: incremental
run: |
# Now re-bootstrap and build. The build is incremental because we were careful with the timestamps.
./bootstrap && make sagemath_doc_html-build-deps
working-directory: ./worktree-image
env:
MAKE: make -j2 --output-sync=recurse
SAGE_NUM_THREADS: 2
- name: Build (fallback to non-incremental)
id: build
if: (success() || failure()) && steps.worktree.outcome == 'success' && steps.incremental.outcome != 'success'
run: |
set -ex
make sagelib-clean && git clean -fx src/sage && ./config.status && make sagemath_doc_html-build-deps
working-directory: ./worktree-image
env:
MAKE: make -j2 --output-sync=recurse
SAGE_NUM_THREADS: 2
- name: Build docs
id: docbuild
if: (success() || failure()) && (steps.incremental.outcome == 'success' || steps.build.outcome == 'success')
# Always non-incremental because of the concern that
# incremental docbuild may introduce broken links (inter-file references) though build succeeds
run: |
set -ex
export SAGE_USE_CDNS=yes
mv /sage/local/share/doc/sage/html/.git /sage/.git-doc
make doc-clean doc-uninstall
mkdir -p /sage/local/share/doc/sage/html/ && mv /sage/.git-doc /sage/local/share/doc/sage/html/.git
./config.status && make sagemath_doc_html-no-deps
working-directory: ./worktree-image
env:
MAKE: make -j2 --output-sync=recurse
SAGE_NUM_THREADS: 2
- name: Copy docs
id: copy
if: (success() || failure()) && steps.docbuild.outcome == 'success'
run: |
set -ex
mkdir -p ./docs
(cd /sage/local/share/doc/sage/html && git commit -a -m 'new')
# Wipe out chronic diffs between old doc and new doc
(cd /sage/local/share/doc/sage/html && \
find . -name "*.html" | xargs sed -i -e '\;<script type="application/vnd\.jupyter\.widget-state+json">;,\;</script>; d')
# Create CHANGES.html
echo '<html>' > ./docs/CHANGES.html
echo '<head>' >> ./docs/CHANGES.html
echo '<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.9.0/styles/default.min.css">' >> ./docs/CHANGES.html
echo '<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/11.9.0/highlight.min.js"></script>' >> ./docs/CHANGES.html
echo '<script>hljs.highlightAll();</script>' >> ./docs/CHANGES.html
cat >> ./docs/CHANGES.html << EOF
<script>
document.addEventListener('DOMContentLoaded', () => {
const diffSite = 'https://pianomister.github.io/diffsite/'
const baseDocURL = 'https://sagemath-tobias.netlify.app/'
const diffParagraphs = document.querySelectorAll('p.diff');
diffParagraphs.forEach(paragraph => {
const rootURL = window.location.origin + '/';
const docAnchor = paragraph.querySelector('a');
const path = docAnchor.textContent; // .href doesn't work
const anchor = document.createElement('a');
anchor.href = diffSite + '?url1=' + rootURL + path + '&url2=' + baseDocURL + path;
anchor.textContent = 'compare with the base';
anchor.setAttribute('target', '_blank');
paragraph.appendChild(anchor);
});
});
</script>
EOF
echo '</head>' >> ./docs/CHANGES.html
echo '<body>' >> ./docs/CHANGES.html
(cd /sage/local/share/doc/sage/html && git diff HEAD^ -- *.html; rm -rf .git) > ./docs/diff.txt
/sage/sage -python - << EOF
import re, html
with open('./docs/diff.txt', 'r') as f:
diff_text = f.read()
diff_blocks = re.split(r'^(?=diff --git)', diff_text, flags=re.MULTILINE)
out_blocks = []
for block in diff_blocks:
match = re.search(r'^diff --git a/(.*) b/\1', block, flags=re.MULTILINE)
if match:
path = 'html/' + match.group(1)
out_blocks.append(f'<p class="diff"><a href="{path}">{path}</a>&emsp;</p>\n<pre><code class="language-diff">' + html.escape(block).strip() + '</code></pre>')
output_text = '\n'.join(out_blocks)
with open('./docs/diff.html', 'w') as f:
f.write(output_text)
EOF
cat ./docs/diff.html >> ./docs/CHANGES.html
echo '</body>' >> ./docs/CHANGES.html
echo '</html>' >>./docs/CHANGES.html
rm ./docs/diff.txt ./docs/diff.html
# For some reason the deploy step below cannot find /sage/...
# So copy everything from there to local folder
# We also need to replace the symlinks because netlify is not following them
cp -r -L /sage/local/share/doc/sage/html ./docs
cp /sage/local/share/doc/sage/index.html ./docs
# Zip everything for increased performance
zip -r docs.zip docs
- name: Upload docs
if: (success() || failure()) && steps.copy.outcome == 'success'
uses: actions/upload-artifact@v3
with:
name: docs
path: docs.zip
- name: Build live doc
id: buildlivedoc
if: (success() || failure()) && steps.copy.outcome == 'success' && github.repository == 'sagemath/sage' && github.ref == 'refs/heads/develop'
run: |
set -ex
export SAGE_USE_CDNS=yes
export SAGE_LIVE_DOC=yes
export SAGE_JUPYTER_SERVER=binder:sagemath/sage-binder-env/dev
make doc-clean doc-uninstall
./config.status && make sagemath_doc_html-no-deps
working-directory: ./worktree-image
env:
MAKE: make -j2 --output-sync=recurse
SAGE_NUM_THREADS: 2
- name: Copy live doc
id: copylivedoc
if: (success() || failure()) && steps.buildlivedoc.outcome == 'success'
run: |
set -ex
mkdir -p ./livedoc
cp -r -L /sage/local/share/doc/sage/html ./livedoc
cp /sage/local/share/doc/sage/index.html ./livedoc
zip -r livedoc.zip livedoc
- name: Upload live doc
if: (success() || failure()) && steps.copylivedoc.outcome == 'success'
uses: actions/upload-artifact@v3
with:
name: livedoc
path: livedoc.zip