Upgrade jupyterlab to 3.3.x, add "sage -n nbclassic" and "sage -n retrolab" #32069

mkoeppe · 2021-06-27T21:25:40Z

#30246 added jupyterlab 2.2.x as an optional package as part of Meta-ticket #30399.

The 3.0 series has been out since December 2020. https://pypi.org/project/jupyterlab/#history

Current as of Mar 2022 is 3.3.0. It still supports Python 3.7, as needed for Sage 9.6.

It is now also possible to run the classic notebook on top of jupyterlab - https://pypi.org/project/nbclassic/
(See also https://github.com/jupyterlab/retrolab#relation-to-other-jupyter-frontends)

CC: @slel @jcamp0x2a @dimpase @egourgoulhon

Component: packages: optional

Keywords: jupyterlab

Author: Matthias Koeppe

Branch/Commit: 1243bd8

Reviewer: Eric Gourgoulhon

Issue created by migration from https://trac.sagemath.org/ticket/32069

The text was updated successfully, but these errors were encountered:

mkoeppe · 2021-06-27T21:36:36Z

Dependencies: #31280

mkoeppe · 2021-06-27T22:59:25Z

Changed dependencies from #31280 to #31280, #32071

mkoeppe · 2021-06-27T23:22:42Z

Branch: u/mkoeppe/upgrade_jupyterlab_to_3_0_x

mkoeppe · 2021-06-27T23:23:16Z

Last 10 new commits:

`2694cbf`	`build/pkgs/requests/checksums.ini: Add upstream_url`
`62769f9`	`build/pkgs/rst2ipynb/checksums.ini: Add upstream_url`
`eb6d3d0`	`build/pkgs/scandir/checksums.ini: Add upstream_url`
`e2cada9`	`build/pkgs/snowballstemmer/checksums.ini: Add upstream_url`
`d83e2f8`	`build/pkgs/wcwidth/checksums.ini: Add upstream_url`
`c943913`	`build/pkgs/{backcall,ptyprocess}/dependencies: flit_core switched from pytoml to toml; remove pytoml package`
`6225684`	`Merge #31280`
`0075b33`	`build/pkgs/{scipy,sphinx,sympy}/install-requires.txt: Update version ranges to include the version in package-version.txt`
`5116399`	`Merge #32071`
`62e5a88`	`build/pkgs/jupyterlab: Update to 3.0.x`

mkoeppe · 2021-06-27T23:23:16Z

Author: Matthias Koeppe

mkoeppe · 2021-06-27T23:23:16Z

Commit: 62e5a88

sagetrac-git · 2021-07-06T19:26:17Z

Branch pushed to git repo; I updated commit sha1. New commits:

`b348305`	`Merge tag '9.4.beta4' into t/31280/jupyter_upgrade`
`2582707`	`build/pkgs/ptyprocess: Revert upgrade to 0.7.0; pin version to 0.5.1`
`45cf013`	`build/pkgs/rst2ipynb/patches: Remove`
`7762e01`	`Merge #31280`

sagetrac-git · 2021-07-06T19:26:17Z

Changed commit from 62e5a88 to 7762e01

mkoeppe · 2021-07-06T19:26:45Z

Changed dependencies from #31280, #32071 to #31280

mkoeppe · 2021-07-19T00:44:56Z

comment:8

Setting a new milestone for this ticket based on a cursory review.

slel · 2021-07-27T20:58:25Z

comment:9

JupyterLab 3.1.0 was released.

https://github.com/jupyterlab/jupyterlab/releases/tag/v3.1.0

mkoeppe · 2021-08-12T05:03:33Z

Work Issues: merge updated #31280, update packages

mkoeppe · 2021-09-14T01:31:00Z

Changed work issues from merge updated #31280, update packages to none

mkoeppe · 2021-09-14T01:31:00Z

Changed dependencies from #31280 to #32493

sagetrac-git · 2021-09-14T01:31:24Z

Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:

`0632776`	`build/pkgs/jupyterlab: Update to 3.1.x`
`00f06a6`	`build/pkgs/{bleach,html5lib,importlib_resources,sagenb_export}/dependencies: Add missing deps`
`ac8bce8`	`Merge #31280`
`a15e3eb`	`build/pkgs/{flit_core,jupyterlab_pygments,matplotlib_inline,nbclient,nbconvert}/dependencies: Add missing deps`
`dc094c0`	`build/pkgs/{ipykernel,nbconvert}/dependencies: Add missing deps`
`c929321`	`build/pkgs/nbclient/dependencies: fixup`
`41224af`	`build/pkgs/nbconvert/dependencies: Add missing dep`
`0fc01d3`	`build/pkgs/zipp: Update to 3.5.0`
`8a314c2`	`build/pkgs/bleach/dependencies: Add six`
`7984ef6`	`Merge #32493`

sagetrac-git · 2021-09-14T01:31:24Z

Changed commit from 7762e01 to 7984ef6

mkoeppe · 2021-09-14T01:34:30Z

New commits:

`0632776`	`build/pkgs/jupyterlab: Update to 3.1.x`
`00f06a6`	`build/pkgs/{bleach,html5lib,importlib_resources,sagenb_export}/dependencies: Add missing deps`
`ac8bce8`	`Merge #31280`
`a15e3eb`	`build/pkgs/{flit_core,jupyterlab_pygments,matplotlib_inline,nbclient,nbconvert}/dependencies: Add missing deps`
`dc094c0`	`build/pkgs/{ipykernel,nbconvert}/dependencies: Add missing deps`
`c929321`	`build/pkgs/nbclient/dependencies: fixup`
`41224af`	`build/pkgs/nbconvert/dependencies: Add missing dep`
`0fc01d3`	`build/pkgs/zipp: Update to 3.5.0`
`8a314c2`	`build/pkgs/bleach/dependencies: Add six`
`7984ef6`	`Merge #32493`

mkoeppe · 2021-09-14T01:34:30Z

Changed dependencies from #32493 to #32493, #32482

sagetrac-git · 2021-09-14T01:39:00Z

Branch pushed to git repo; I updated commit sha1. Last 10 new commits:

`59132ab`	`build/pkgs/tomli: New, dependency of setuptools_scm`
`7ebcb6c`	`build/pkgs/setuptools_scm/dependencies: Add packaging`
`2def651`	`build/pkgs/{packaging,pyparsing,setuptools_scm}/dependencies: Avoid circular deps`
`3e2fb34`	`Merge #31280`
`aceeeeb`	`Merge #32493`
`bf15a7b`	`build/pkgs/tomli/dependencies: Add flit_core`
`432699d`	`build/pkgs/flit_core/dependencies: Remove dep on toml again, replace PYTHON_TOOLCHAIN by pip only, to break circular dep`
`f10ea0b`	`build/pkgs/tomli/dependencies: Replace PYTHON_TOOLCHAIN by pip only, to break circular dep`
`4bdbddd`	`build/pkgs/tomli/dependencies: Add toml because flit_core needs it at its runtime`
`1fc1ba3`	`Merge #32482`

mkoeppe · 2022-03-05T19:07:08Z

comment:45

Added some more variants.

egourgoulhon · 2022-03-05T20:10:22Z

comment:46

Thanks for the update. There is no longer any issue with jupyter_packaging, but ./sage -i jupyterlab_widgets fails now in the build of ipyml:

[ipympl-0.8.8] Attempting to download from https://pypi.io/packages/source/i/ipympl/ipympl-0.8.8.tar.gz
[ipympl-0.8.8] [......................................................................]
[ipympl-0.8.8] ipympl-0.8.8
[ipympl-0.8.8] ====================================================
[ipympl-0.8.8] Setting up build directory for ipympl-0.8.8
[ipympl-0.8.8] Finished extraction
[ipympl-0.8.8] No patch files found in ../patches
[ipympl-0.8.8] ****************************************************
[ipympl-0.8.8] Host system:
[ipympl-0.8.8] Linux cartan 5.13.0-30-generic #33~20.04.1-Ubuntu SMP Mon Feb 7 14:25:10 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
[ipympl-0.8.8] ****************************************************
[ipympl-0.8.8] C compiler: gcc
[ipympl-0.8.8] C compiler version:
[ipympl-0.8.8] Using built-in specs.
[ipympl-0.8.8] COLLECT_GCC=gcc
[ipympl-0.8.8] COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
[ipympl-0.8.8] OFFLOAD_TARGET_NAMES=nvptx-none:hsa
[ipympl-0.8.8] OFFLOAD_TARGET_DEFAULT=1
[ipympl-0.8.8] Target: x86_64-linux-gnu
[ipympl-0.8.8] Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
[ipympl-0.8.8] Thread model: posix
[ipympl-0.8.8] gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) 
[ipympl-0.8.8] ****************************************************
[ipympl-0.8.8] Package 'ipympl' is currently not installed
[ipympl-0.8.8] No legacy uninstaller found for 'ipympl'; nothing to do
[ipympl-0.8.8] Installing ipympl-0.8.8
[ipympl-0.8.8] Processing /home/eric/sage/9.6.develop/local/var/lib/sage/venv-python3.8/var/tmp/sage/build/ipympl-0.8.8/src
[ipympl-0.8.8]   Preparing metadata (pyproject.toml): started
[ipympl-0.8.8]   Running command Preparing metadata (pyproject.toml)
[ipympl-0.8.8]   Traceback (most recent call last):
[ipympl-0.8.8]     File "/home/eric/sage/9.6.develop/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in <module>
[ipympl-0.8.8]       main()
[ipympl-0.8.8]     File "/home/eric/sage/9.6.develop/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main
[ipympl-0.8.8]       json_out['return_val'] = hook(**hook_input['kwargs'])
[ipympl-0.8.8]     File "/home/eric/sage/9.6.develop/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel
[ipympl-0.8.8]       return hook(metadata_directory, config_settings)
[ipympl-0.8.8]     File "/home/eric/sage/9.6.develop/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/setuptools/build_meta.py", line 174, in prepare_metadata_for_build_wheel
[ipympl-0.8.8]       self.run_setup()
[ipympl-0.8.8]     File "/home/eric/sage/9.6.develop/local/var/lib/sage/venv-python3.8/lib/python3.8/site-packages/setuptools/build_meta.py", line 158, in run_setup
[ipympl-0.8.8]       exec(compile(code, __file__, 'exec'), locals())
[ipympl-0.8.8]     File "setup.py", line 41, in <module>
[ipympl-0.8.8]       cmdclass = create_cmdclass('jsdeps', data_files_spec=data_files_spec)
[ipympl-0.8.8]   TypeError: 'NoneType' object is not callable
[ipympl-0.8.8]   error: subprocess-exited-with-error

sagetrac-git · 2022-03-05T21:57:41Z

Branch pushed to git repo; I updated commit sha1. New commits:

`1a3c7df`	`build/pkgs/{jupyter_packaging,ipympl}: Reduce to pip packages`

sagetrac-git · 2022-03-05T21:57:41Z

Changed commit from efc92cd to 1a3c7df

mkoeppe · 2022-03-05T21:59:28Z

comment:48

Thanks for testing! Here's a new version

sagetrac-git · 2022-03-05T22:01:15Z

Changed commit from 1a3c7df to 9b30976

sagetrac-git · 2022-03-05T22:01:15Z

Branch pushed to git repo; I updated commit sha1. New commits:

`9b30976`	`build/pkgs/jupyterlab_widgets/package-version.txt: Remove`

sagetrac-git · 2022-03-05T22:02:08Z

Changed commit from 9b30976 to 7b277c9

sagetrac-git · 2022-03-05T22:02:08Z

Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:

`7b277c9`	`build/pkgs/{jupyter_packaging,ipympl}: Reduce to pip packages`

sagetrac-git · 2022-03-05T22:03:10Z

Changed commit from 7b277c9 to 9514d82

sagetrac-git · 2022-03-05T22:03:10Z

Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:

`9514d82`	`build/pkgs/{jupyter_packaging,ipympl}: Reduce to pip packages`

sagetrac-git · 2022-03-05T22:04:25Z

Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:

`1243bd8`	`build/pkgs/{jupyter_packaging,ipympl}: Reduce to pip packages`

sagetrac-git · 2022-03-05T22:04:25Z

Changed commit from 9514d82 to 1243bd8

egourgoulhon · 2022-03-06T10:05:18Z

comment:55

Works like a charm now. Thank you!
I've also tested the new notebook interfaces nbclassic and retrolab. Thanks for having added them!

egourgoulhon · 2022-03-06T10:05:18Z

Reviewer: Eric Gourgoulhon

egourgoulhon · 2022-03-06T10:36:58Z

comment:56

The issue of %matplotlib widget being inoperative within the scope of %display latex is tracked in #33469. This is not specific to jupyterlab: it also happens with jupyter.

egourgoulhon · 2022-03-06T10:50:44Z

Changed keywords from none to jupyterlab

mkoeppe · 2022-03-06T16:46:59Z

comment:58

Thanks for testing!

vbraun · 2022-03-09T23:38:24Z

Changed branch from u/mkoeppe/upgrade_jupyterlab_to_3_0_x to 1243bd8

mkoeppe added this to the sage-9.4 milestone Jun 27, 2021

mkoeppe added c: packages: optional labels Jun 27, 2021

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mkoeppe added the s: needs review label Jun 27, 2021

mkoeppe modified the milestones: sage-9.4, sage-9.5 Jul 19, 2021

mkoeppe added s: needs work and removed s: needs review labels Aug 12, 2021

mkoeppe changed the title ~~Upgrade jupyterlab to 3.0.x~~ Upgrade jupyterlab to 3.1.x Sep 14, 2021

mkoeppe changed the title ~~Upgrade jupyterlab to 3.3.x~~ Upgrade jupyterlab to 3.3.x, add "sage -n nbclassic" and "sage -n retrolab" Mar 5, 2022

mkoeppe added s: needs work and removed s: needs review labels Mar 5, 2022

mkoeppe added s: needs review and removed s: needs work labels Mar 5, 2022

egourgoulhon added s: positive review and removed s: needs review labels Mar 6, 2022

vbraun removed the s: positive review label Mar 9, 2022

vbraun closed this as completed in 78990d5 Mar 9, 2022

slel mentioned this issue Jan 7, 2023

Make jupyterlab a standard package, update notebook to 7.x #24904

Closed

egourgoulhon mentioned this issue Mar 30, 2022

%matplotlib widget does not work in the scope of %display latex #33469

Closed

Upgrade jupyterlab to 3.3.x, add "sage -n nbclassic" and "sage -n retrolab" #32069

Upgrade jupyterlab to 3.3.x, add "sage -n nbclassic" and "sage -n retrolab" #32069

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