upgrade shipped suitesparse components to 7.8.0

[kiwifb]

This is to fix #37192 and supersedes #34206
The new cmake superbuild is leveraged to only build the suitesparse components of interest

• amd
• camd
• colamd
• ccolamd
• cholmod
• umfpack

📝 Checklist

• The title is concise, informative, and self-explanatory.
• The description explains in detail what this PR is about.
• I have linked a relevant issue or discussion.
• I have created tests covering the changes.
• I have updated the documentation accordingly.

⌛ Dependencies

[dimpase]

lgtm

[dimpase]

please feel free to adjust tags accordingly

[dimpase]

the failing doctest

sage -t --long --random-seed=286735480429121101562228604801325644303 sage_setup/clean.py  # 1 doctest failed

looks irrelevant to this PR

[kiwifb]

Sorry, I have been busy. I think I need to explain some of the options I set with cmake a little bit more before shipping it.

[kiwifb]

Since all I have done in the last commit is add some text, I will label it positive review as approved by Dima.

[mkoeppe]

Has this been tested on more than one machine?

"CI Linux Incremental" is only being run now that the label "c: packages: standard" is set.
(See #37222 for that.)

[kiwifb]

Well, some CI ran before, but yes, I do not think it ran on Mac OS before for example. I'll just push your comma change and remove the positive review label until the full CI ran.

[mkoeppe]

I'm running the full CI Linux in https://github.com/mkoeppe/sage/actions/runs/7748353404 and CI macOS in https://github.com/mkoeppe/sage/actions/runs/7748353409

[mkoeppe]

Various failures:
"CMake 3.22 or higher is required. You are running version 3.20.2" on https://github.com/mkoeppe/sage/actions/runs/7748353404/job/21130825606#step:14:490 (standard-pre / linux (almalinux-9-python3.11, standard))

In file included from /sage/local/var/tmp/sage/build/suitesparse-7.6.0/src/CHOLMOD/Include/cholmod.h:308,
                   from /sage/local/var/tmp/sage/build/suitesparse-7.6.0/src/CHOLMOD/Include/cholmod_internal.h:33,
                   from /sage/local/var/tmp/sage/build/suitesparse-7.6.0/src/CHOLMOD/Check/cholmod_check.c:65:
  /sage/local/var/tmp/sage/build/suitesparse-7.6.0/src/SuiteSparse_config/SuiteSparse_config.h:583:65: error: expected ')' before ',' token
    583 |     #define SUITESPARSE_BLAS(name,NAME) SUITESPARSE_FORTRAN(name,NAME)
        |                                                                 ^

(https://github.com/mkoeppe/sage/actions/runs/7748353404/job/21130813895#step:14:1077, minimal-pre / linux (ubuntu-lunar, minimal))

Likewise on many other platforms. This sounds familiar from the last attempt. I'll take a closer look in the next days.

[mkoeppe]

The cmake version tightening was already on the old branch, can just cherry pick from there - sagemath/sagetrac-mirror@6f4032e

[kiwifb]

Sounds like something that's overdue in any case. I will deal with it ASAP.

[kiwifb]

There are three build failure of suitesparse 7.6.0 so far but I do not have enough of the build log to make a diagnostic.

[mkoeppe]

You can see the full build log in the section "Print out logs for immediate inspection", e.g. https://github.com/sagemath/sage/actions/runs/7752508002/job/21142181161?pr=37204, clock on the triangle to expand the collapsed portion

[kiwifb]

Thanks, found it. There is mismatch between system gcc (13) and sage's gfortran (12). I am suspecting that's the issue. I think turning off fortran should be OK, so I'll try that.

[mkoeppe]

IIRC, that was also the issue last time. It may be worth trying if just disabling LTO would solve this.

[kiwifb]

What Flag would that be?

[mkoeppe]

-fno-lto, I think; untested

[kiwifb]

-fno-lto (which should be correct according to documentation had no effect. Let's see if removing fortran support has an effect.

[github-actions]

Documentation preview for this PR (built with commit c53fac1; changes) is ready! 🎉
This preview will update shortly after each push to this PR.

[kiwifb]

The last conda tests appear to be stuck. The failing tests so far look unrelated.

[kiwifb]

OK, retrying here, will move 7.8.0 (7.8.1 is identical apart from graphblas which we do not use).

[kiwifb]

This PR is now about suitesparse 7.8.0

[mkoeppe]

Portability tests (with a bunch of other upgrades) at https://github.com/mkoeppe/sage/actions/runs/10484245959

[mkoeppe]

Builds and tests OK on macOS (x86_64) with homebrew

[mkoeppe]

Looking good, thanks for preparing this upgrade!

[mkoeppe]

@vbraun

  [suitesparse-7.8.0] https://ftp.sun.ac.za/ftp/pub/mirrors/www.sagemath.org/spkg/upstream/suitesparse/SuiteSparse-7.8.0.tar.gz
  [suitesparse-7.8.0] [xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx]
  [suitesparse-7.8.0] ERROR [transfer|run:135]: [Errno socket error] [Errno 404] Not Found: '//ftp.sun.ac.za/ftp/pub/mirrors/www.sagemath.org/spkg/upstream/suitesparse/SuiteSparse-7.8.0.tar.gz'
  [suitesparse-7.8.0] Traceback (most recent call last):
  [suitesparse-7.8.0]   File "/home/runner/work/sage/sage/build/bin/sage-package", line 40, in <module> [....]
  [suitesparse-7.8.0] sage_bootstrap.tarball.FileNotMirroredError: tarball does not exist on mirror network

https://github.com/sagemath/sage/actions/runs/10691572603/job/29638332632#step:4:3332