sagemath · vbraun · Aug 3, 2024 · May 6, 2024 · May 6, 2024 · May 6, 2024
diff --git a/.ci/write-dockerfile.sh b/.ci/write-dockerfile.sh
@@ -354,7 +354,7 @@ RUN cd /new && rm -rf .git && \
         mv src /sage/src;                                    \
         cd /sage && ./bootstrap && ./config.status;          \
     fi; \
-    cd /sage && rm -rf /new .git
+    cd /sage && rm -rf .git; rm -rf /new || echo "(error ignored)"
 
 ARG TARGETS="build"
 $RUN $CHECK_STATUS_THEN make SAGE_SPKG="sage-spkg -y -o" \${USE_MAKEFLAGS} \${TARGETS} $ENDRUN $THEN_SAVE_STATUS

diff --git a/.github/workflows/ci-linux-incremental.yml b/.github/workflows/ci-linux-incremental.yml
@@ -124,7 +124,8 @@ jobs:
       # with only a small number of test failures as of 10.2.rc0
       tox_system_factors: >-
         ["gentoo-python3.11",
-         "archlinux-latest"]
+         "archlinux-latest",
+         "fedora-40"]
       tox_packages_factors: >-
           ["standard-sitepackages"]
       docker_push_repository: ghcr.io/${{ github.repository }}/
diff --git a/.github/workflows/ci-linux.yml b/.github/workflows/ci-linux.yml
@@ -116,8 +116,7 @@ jobs:
          "debian-sid",
          "linuxmint-21.1",
          "linuxmint-21.2",
-         "fedora-38",
-         "fedora-39",
+         "fedora-40",
          "centos-stream-9-python3.9",
          "almalinux-8-python3.9",
          "gentoo-python3.10",

diff --git a/build/pkgs/4ti2/distros/fedora.txt b/build/pkgs/4ti2/distros/fedora.txt
@@ -1 +1,2 @@
 4ti2
+4ti2-devel
diff --git a/build/pkgs/_python3.9/distros/fedora.txt b/build/pkgs/_python3.9/distros/fedora.txt
@@ -1,3 +1,3 @@
 python3.9
-python3.9-devel
 # Except on centos-stream-8 and almalinux-8, where it is called python39 and python39-devel; we special-case this in tox.ini
+# python3.9 does not exist any more
diff --git a/build/pkgs/beautifulsoup4/distros/fedora.txt b/build/pkgs/beautifulsoup4/distros/fedora.txt
@@ -1 +1 @@
-python-beautifulsoup4
+python3-beautifulsoup4
diff --git a/build/pkgs/beniget/distros/fedora.txt b/build/pkgs/beniget/distros/fedora.txt
@@ -0,0 +1 @@
+python3-beniget
diff --git a/build/pkgs/biopython/distros/fedora.txt b/build/pkgs/biopython/distros/fedora.txt
@@ -0,0 +1 @@
+python3-biopython
diff --git a/build/pkgs/bleach/distros/fedora.txt b/build/pkgs/bleach/distros/fedora.txt
@@ -1 +1 @@
-python-bleach
+python3-bleach
diff --git a/build/pkgs/ccache/distros/fedora.txt b/build/pkgs/ccache/distros/fedora.txt
@@ -0,0 +1 @@
+ccache
diff --git a/build/pkgs/cddlib/distros/fedora.txt b/build/pkgs/cddlib/distros/fedora.txt
@@ -1 +1,2 @@
 cddlib
+cddlib-devel
diff --git a/build/pkgs/certifi/distros/fedora.txt b/build/pkgs/certifi/distros/fedora.txt
@@ -1 +1 @@
-python-certifi
+python3-certifi
diff --git a/build/pkgs/cffi/distros/fedora.txt b/build/pkgs/cffi/distros/fedora.txt
@@ -0,0 +1 @@
+python3-cffi
diff --git a/build/pkgs/charset_normalizer/distros/fedora.txt b/build/pkgs/charset_normalizer/distros/fedora.txt
@@ -0,0 +1 @@
+python3-charset-normalizer
diff --git a/build/pkgs/cocoalib/distros/fedora.txt b/build/pkgs/cocoalib/distros/fedora.txt
@@ -0,0 +1,2 @@
+cocoalib
+cocoalib-devel
diff --git a/build/pkgs/comm/fedora.txt b/build/pkgs/comm/fedora.txt
@@ -0,0 +1 @@
+python3-comm
diff --git a/build/pkgs/contourpy/distros/fedora.txt b/build/pkgs/contourpy/distros/fedora.txt
@@ -0,0 +1 @@
+python3-contourpy
diff --git a/build/pkgs/cppy/distros/fedora.txt b/build/pkgs/cppy/distros/fedora.txt
@@ -0,0 +1 @@
+python3-cppy
diff --git a/build/pkgs/csdp/distros/fedora.txt b/build/pkgs/csdp/distros/fedora.txt
@@ -0,0 +1,3 @@
+csdp
+csdp-devel
+csdp-tools
diff --git a/build/pkgs/cvxopt/distros/fedora.txt b/build/pkgs/cvxopt/distros/fedora.txt
@@ -1 +1 @@
-python-cvxopt
+python3-cvxopt
diff --git a/build/pkgs/cycler/distros/fedora.txt b/build/pkgs/cycler/distros/fedora.txt
@@ -1 +1 @@
-python-cycler
+python3-cycler
diff --git a/build/pkgs/cython/distros/fedora.txt b/build/pkgs/cython/distros/fedora.txt
@@ -1 +1 @@
-Cython
+python3-cython
diff --git a/build/pkgs/dateutil/distros/fedora.txt b/build/pkgs/dateutil/distros/fedora.txt
@@ -1 +1 @@
-python-dateutil
+python3-dateutil
diff --git a/build/pkgs/decorator/distros/fedora.txt b/build/pkgs/decorator/distros/fedora.txt
@@ -1 +1 @@
-python-decorator
+python3-decorator
diff --git a/build/pkgs/defusedxml/distros/fedora.txt b/build/pkgs/defusedxml/distros/fedora.txt
@@ -0,0 +1 @@
+python3-defusedxml
diff --git a/build/pkgs/docutils/distros/fedora.txt b/build/pkgs/docutils/distros/fedora.txt
@@ -0,0 +1 @@
+python3-docutils
diff --git a/build/pkgs/dot2tex/distros/fedora.txt b/build/pkgs/dot2tex/distros/fedora.txt
@@ -0,0 +1 @@
+dot2tex
diff --git a/build/pkgs/editables/distros/fedora.txt b/build/pkgs/editables/distros/fedora.txt
@@ -0,0 +1 @@
+python3-editables
diff --git a/build/pkgs/entrypoints/distros/fedora.txt b/build/pkgs/entrypoints/distros/fedora.txt
@@ -0,0 +1 @@
+python3-entrypoints
diff --git a/build/pkgs/executing/distros/fedora.txt b/build/pkgs/executing/distros/fedora.txt
@@ -0,0 +1 @@
+python3-executing
diff --git a/build/pkgs/fastjsonschema/distros/fedora.txt b/build/pkgs/fastjsonschema/distros/fedora.txt
@@ -1 +1 @@
-python-fastjsonschema
+python3-fastjsonschema
diff --git a/build/pkgs/ffmpeg/distros/fedora.txt b/build/pkgs/ffmpeg/distros/fedora.txt
@@ -1,3 +1,5 @@
 # ffmpeg is not in the standard Fedora repository
 # Need "RPM Fusion Free"
 #ffmpeg
+ffmpeg-free
+ffmpeg-free-devel
diff --git a/build/pkgs/flit_core/distros/fedora.txt b/build/pkgs/flit_core/distros/fedora.txt
@@ -0,0 +1 @@
+python3-flit-core
diff --git a/build/pkgs/fonttools/distros/fedora.txt b/build/pkgs/fonttools/distros/fedora.txt
@@ -0,0 +1 @@
+python3-fonttools
diff --git a/build/pkgs/fpylll/dependencies b/build/pkgs/fpylll/dependencies
@@ -1,4 +1,4 @@
- cython cysignals numpy fplll | $(PYTHON)
+ cython cysignals numpy fplll | $(PYTHON_TOOLCHAIN) $(PYTHON)
 
 ----------
 All lines of this file are ignored except the first.
diff --git a/build/pkgs/free_fonts/distros/fedora.txt b/build/pkgs/free_fonts/distros/fedora.txt
@@ -1,3 +1,4 @@
 gnu-free-mono-fonts
 gnu-free-sans-fonts
 gnu-free-serif-fonts
+texlive-gnu-freefont
diff --git a/build/pkgs/frobby/distros/fedora.txt b/build/pkgs/frobby/distros/fedora.txt
@@ -0,0 +1,3 @@
+frobby
+libfrobby
+libfrobby-devel
diff --git a/build/pkgs/furo/distros/fedora.txt b/build/pkgs/furo/distros/fedora.txt
@@ -1 +1 @@
-python-furo
+python3-furo
diff --git a/build/pkgs/gap/distros/fedora.txt b/build/pkgs/gap/distros/fedora.txt
@@ -1,5 +1,72 @@
+# some packages are missing in Fedora
 gap
 gap-core
 gap-devel
 gap-libs
 libgap
+xgap
+gap-pkg-ace
+gap-pkg-aclib
+gap-pkg-alnuth
+gap-pkg-anupq
+gap-pkg-atlasrep
+gap-pkg-autodoc
+gap-pkg-automata
+gap-pkg-autpgrp
+gap-pkg-browse
+gap-pkg-caratinterface
+gap-pkg-circle
+gap-pkg-congruence
+gap-pkg-crisp
+gap-pkg-crypting
+gap-pkg-crystcat
+gap-pkg-curlinterface
+gap-pkg-cvec
+gap-pkg-datastructures
+gap-pkg-digraphs
+gap-pkg-edim
+gap-pkg-ferret
+gap-pkg-fga
+gap-pkg-fining
+gap-pkg-float
+gap-pkg-format
+gap-pkg-forms
+gap-pkg-fplsa
+gap-pkg-fr
+gap-pkg-francy
+gap-pkg-genss
+gap-pkg-groupoids
+gap-pkg-grpconst
+gap-pkg-images
+gap-pkg-io
+gap-pkg-irredsol
+gap-pkg-json
+gap-pkg-jupyterviz
+gap-pkg-lpres
+gap-pkg-nq
+gap-pkg-openmath
+gap-pkg-orb
+gap-pkg-permut
+gap-pkg-polenta
+gap-pkg-polycyclic
+gap-pkg-primgrp
+gap-pkg-profiling
+gap-pkg-radiroot
+gap-pkg-recog
+gap-pkg-resclasses
+gap-pkg-scscp
+gap-pkg-semigroups
+gap-pkg-singular
+gap-pkg-smallgrp
+gap-pkg-smallsemi
+gap-pkg-sophus
+gap-pkg-spinsym
+gap-pkg-standardff
+gap-pkg-tomlib
+gap-pkg-transgrp
+gap-pkg-transgrp-data
+gap-pkg-utils
+gap-pkg-uuid
+gap-pkg-xmod
+gap-pkg-zeromqinterface
+
diff --git a/build/pkgs/gap_jupyter/distros/fedora.txt b/build/pkgs/gap_jupyter/distros/fedora.txt
@@ -0,0 +1 @@
+gap-pkg-jupyterkernel
diff --git a/build/pkgs/gap_packages/distros/fedora.txt b/build/pkgs/gap_packages/distros/fedora.txt
@@ -0,0 +1,27 @@
+gap-pkg-cohomolo
+gap-pkg-corelg
+gap-pkg-crime
+gap-pkg-cryst
+gap-pkg-ctbllib
+gap-pkg-design
+gap-pkg-factint
+GAPDoc
+gap-pkg-gbnp
+gap-pkg-grape
+gap-pkg-guava
+gap-pkg-hap
+gap-pkg-hapcryst
+gap-pkg-hecke
+gap-pkg-laguna
+gap-pkg-liealgdb
+gap-pkg-liepring
+gap-pkg-liering
+gap-pkg-loops
+gap-pkg-mapclass
+gap-pkg-polymaking
+gap-pkg-qpa
+gap-pkg-quagroup
+gap-pkg-repsn
+gap-pkg-sla
+gap-pkg-sonata
+gap-pkg-toric
diff --git a/build/pkgs/gast/distros/fedora.txt b/build/pkgs/gast/distros/fedora.txt
@@ -0,0 +1 @@
+python3-gast
diff --git a/build/pkgs/gdb/distros/fedora.txt b/build/pkgs/gdb/distros/fedora.txt
@@ -0,0 +1 @@
+gdb
diff --git a/build/pkgs/gmpy2/distros/fedora.txt b/build/pkgs/gmpy2/distros/fedora.txt
@@ -1 +1 @@
-python-gmpy2
+python3-gmpy2
diff --git a/build/pkgs/gp2c/distros/fedora.txt b/build/pkgs/gp2c/distros/fedora.txt
@@ -0,0 +1 @@
+gp2c
diff --git a/build/pkgs/hatchling/distros/fedora.txt b/build/pkgs/hatchling/distros/fedora.txt
@@ -0,0 +1 @@
+python3-hatchling
diff --git a/build/pkgs/idna/distros/fedora.txt b/build/pkgs/idna/distros/fedora.txt
@@ -1 +1 @@
-python-idna
+python3-idna
diff --git a/build/pkgs/imagesize/distros/fedora.txt b/build/pkgs/imagesize/distros/fedora.txt
@@ -0,0 +1 @@
+python3-imagesize
diff --git a/build/pkgs/importlib_metadata/distros/fedora.txt b/build/pkgs/importlib_metadata/distros/fedora.txt
@@ -1 +1 @@
-python-importlib-metadata
+python3-importlib-metadata
diff --git a/build/pkgs/ipykernel/distros/fedora.txt b/build/pkgs/ipykernel/distros/fedora.txt
@@ -1 +1 @@
-python-ipykernel
+python3-ipykernel
diff --git a/build/pkgs/ipython/distros/fedora.txt b/build/pkgs/ipython/distros/fedora.txt
@@ -1 +1 @@
-ipython
+python3-ipython
diff --git a/build/pkgs/ipython_genutils/distros/fedora.txt b/build/pkgs/ipython_genutils/distros/fedora.txt
@@ -0,0 +1 @@
+python3-ipython_genutils
diff --git a/build/pkgs/ipywidgets/distros/fedora.txt b/build/pkgs/ipywidgets/distros/fedora.txt
@@ -0,0 +1 @@
+python3-ipywidgets
diff --git a/build/pkgs/isl/distros/fedora.txt b/build/pkgs/isl/distros/fedora.txt
@@ -1 +1,2 @@
+isl
 isl-devel
diff --git a/build/pkgs/jedi/distros/fedora.txt b/build/pkgs/jedi/distros/fedora.txt
@@ -0,0 +1 @@
+python3-jedi
diff --git a/build/pkgs/jinja2/distros/fedora.txt b/build/pkgs/jinja2/distros/fedora.txt
@@ -1 +1 @@
-python-jinja2
+python3-jinja2
diff --git a/build/pkgs/jmol/distros/fedora.txt b/build/pkgs/jmol/distros/fedora.txt
@@ -0,0 +1 @@
+jmol
diff --git a/build/pkgs/jsonschema/distros/fedora.txt b/build/pkgs/jsonschema/distros/fedora.txt
@@ -1 +1 @@
-python-jsonschema
+python3-jsonschema
diff --git a/build/pkgs/jupymake/distros/fedora.txt b/build/pkgs/jupymake/distros/fedora.txt
@@ -0,0 +1 @@
+python3-jupymake
diff --git a/build/pkgs/jupyter_client/distros/fedora.txt b/build/pkgs/jupyter_client/distros/fedora.txt
@@ -0,0 +1 @@
+python3-jupyter-client
diff --git a/build/pkgs/jupyter_core/distros/fedora.txt b/build/pkgs/jupyter_core/distros/fedora.txt
@@ -0,0 +1 @@
+python3-jupyter-core
diff --git a/build/pkgs/jupyter_sphinx/distros/fedora.txt b/build/pkgs/jupyter_sphinx/distros/fedora.txt
@@ -1 +1 @@
-python-jupyter-sphinx
+python3-jupyter-sphinx
diff --git a/build/pkgs/jupyterlab/distros/fedora.txt b/build/pkgs/jupyterlab/distros/fedora.txt
@@ -0,0 +1 @@
+jupyterlab
diff --git a/build/pkgs/jupyterlab_pygments/distros/fedora.txt b/build/pkgs/jupyterlab_pygments/distros/fedora.txt
@@ -0,0 +1 @@
+python3-jupyterlab_pygments
diff --git a/build/pkgs/kissat/distros/fedora.txt b/build/pkgs/kissat/distros/fedora.txt
@@ -1 +1,2 @@
 kissat
+kissat-devel
diff --git a/build/pkgs/kiwisolver/distros/fedora.txt b/build/pkgs/kiwisolver/distros/fedora.txt
@@ -0,0 +1 @@
+python3-kiwisolver
diff --git a/build/pkgs/latte_int/distros/fedora.txt b/build/pkgs/latte_int/distros/fedora.txt
@@ -0,0 +1 @@
+latte-integrale
diff --git a/build/pkgs/libgraphviz/distros/fedora.txt b/build/pkgs/libgraphviz/distros/fedora.txt
@@ -1 +1,2 @@
 graphviz
+graphviz-devel
diff --git a/build/pkgs/libnauty/distros/fedora.txt b/build/pkgs/libnauty/distros/fedora.txt
@@ -1 +1,2 @@
+libnauty
 libnauty-devel
diff --git a/build/pkgs/libogg/distros/fedora.txt b/build/pkgs/libogg/distros/fedora.txt
@@ -0,0 +1,2 @@
+libogg
+libogg-devel
diff --git a/build/pkgs/libsemigroups/distros/fedora.txt b/build/pkgs/libsemigroups/distros/fedora.txt
@@ -0,0 +1,2 @@
+libsemigroups
+libsemigroups-devel
diff --git a/build/pkgs/libtheora/distros/fedora.txt b/build/pkgs/libtheora/distros/fedora.txt
@@ -0,0 +1,2 @@
+libtheora
+libtheora-devel
diff --git a/build/pkgs/linbox/distros/fedora.txt b/build/pkgs/linbox/distros/fedora.txt
@@ -1 +1,2 @@
+linbox
 linbox-devel
diff --git a/build/pkgs/lrcalc_python/distros/fedora.txt b/build/pkgs/lrcalc_python/distros/fedora.txt
@@ -0,0 +1 @@
+python3-lrcalc
diff --git a/build/pkgs/lrslib/distros/fedora.txt b/build/pkgs/lrslib/distros/fedora.txt
@@ -1 +1,2 @@
 lrslib
+lrslib-devel
diff --git a/build/pkgs/markupsafe/distros/fedora.txt b/build/pkgs/markupsafe/distros/fedora.txt
@@ -0,0 +1 @@
+python3-markupsafe
diff --git a/build/pkgs/mathjax/distros/fedora.txt b/build/pkgs/mathjax/distros/fedora.txt
@@ -0,0 +1 @@
+mathjax3
diff --git a/build/pkgs/matplotlib/distros/fedora.txt b/build/pkgs/matplotlib/distros/fedora.txt
@@ -1 +1 @@
-python-matplotlib
+python3-matplotlib
diff --git a/build/pkgs/matplotlib_inline/distros/fedora.txt b/build/pkgs/matplotlib_inline/distros/fedora.txt
@@ -0,0 +1 @@
+python3-matplotlib-inline
diff --git a/build/pkgs/mcqd/distros/fedora.txt b/build/pkgs/mcqd/distros/fedora.txt
@@ -0,0 +1,2 @@
+mcqd
+mcqd-devel
diff --git a/build/pkgs/meson_python/distros/fedora.txt b/build/pkgs/meson_python/distros/fedora.txt
@@ -1 +1 @@
-python-meson-python
+python3-meson-python
diff --git a/build/pkgs/mistune/distros/fedora.txt b/build/pkgs/mistune/distros/fedora.txt
@@ -0,0 +1 @@
+python3-mistune
diff --git a/build/pkgs/mpmath/distros/fedora.txt b/build/pkgs/mpmath/distros/fedora.txt
@@ -1 +1 @@
-python-mpmath
+python3-mpmath
diff --git a/build/pkgs/nbclient/distros/fedora.txt b/build/pkgs/nbclient/distros/fedora.txt
@@ -0,0 +1 @@
+python3-nbclient
diff --git a/build/pkgs/nbconvert/distros/fedora.txt b/build/pkgs/nbconvert/distros/fedora.txt
@@ -0,0 +1 @@
+python3-nbconvert
diff --git a/build/pkgs/nbformat/distros/fedora.txt b/build/pkgs/nbformat/distros/fedora.txt
@@ -0,0 +1 @@
+python3-nbformat
diff --git a/build/pkgs/nest_asyncio/distros/fedora.txt b/build/pkgs/nest_asyncio/distros/fedora.txt
@@ -0,0 +1 @@
+python3-nest-asyncio
diff --git a/build/pkgs/networkx/distros/fedora.txt b/build/pkgs/networkx/distros/fedora.txt
@@ -1 +1 @@
-python-networkx
+python3-networkx
diff --git a/build/pkgs/nibabel/distros/fedora.txt b/build/pkgs/nibabel/distros/fedora.txt
@@ -0,0 +1 @@
+python3-nibabel
diff --git a/build/pkgs/normaliz/distros/fedora.txt b/build/pkgs/normaliz/distros/fedora.txt
@@ -1 +1,2 @@
+libnormaliz
 libnormaliz-devel
diff --git a/build/pkgs/notebook/distros/fedora.txt b/build/pkgs/notebook/distros/fedora.txt
@@ -0,0 +1 @@
+python3-notebook
diff --git a/build/pkgs/numpy/distros/fedora.txt b/build/pkgs/numpy/distros/fedora.txt
@@ -1 +1 @@
-python-numpy
+python3-numpy
diff --git a/build/pkgs/onetbb/distros/fedora.txt b/build/pkgs/onetbb/distros/fedora.txt
@@ -1 +1,2 @@
+tbb
 tbb-devel
diff --git a/build/pkgs/packaging/distros/fedora.txt b/build/pkgs/packaging/distros/fedora.txt
@@ -1 +1 @@
-python-packaging
+python3-packaging
diff --git a/build/pkgs/palettable/distros/fedora.txt b/build/pkgs/palettable/distros/fedora.txt
@@ -0,0 +1 @@
+python3-palettable
diff --git a/build/pkgs/pandocfilters/distros/fedora.txt b/build/pkgs/pandocfilters/distros/fedora.txt
@@ -1 +1 @@
-python-pandocfilters
+python3-pandocfilters
diff --git a/build/pkgs/pari_jupyter/distros/fedora.txt b/build/pkgs/pari_jupyter/distros/fedora.txt
@@ -0,0 +1 @@
+python3-pari-jupyter
diff --git a/build/pkgs/parso/distros/fedora.txt b/build/pkgs/parso/distros/fedora.txt
@@ -0,0 +1 @@
+python3-parso
diff --git a/build/pkgs/pathspec/distros/fedora.txt b/build/pkgs/pathspec/distros/fedora.txt
@@ -0,0 +1 @@
+python3-pathspec
diff --git a/build/pkgs/perl_cpan_polymake_prereq/distros/fedora.txt b/build/pkgs/perl_cpan_polymake_prereq/distros/fedora.txt
@@ -6,3 +6,4 @@ perl-TermReadKey
 perl-XML-Writer
 perl-XML-LibXML
 perl-XML-LibXSLT
+perl-SVG
diff --git a/build/pkgs/pexpect/distros/fedora.txt b/build/pkgs/pexpect/distros/fedora.txt
@@ -1 +1 @@
-python-pexpect
+python3-pexpect
diff --git a/build/pkgs/pickleshare/distros/fedora.txt b/build/pkgs/pickleshare/distros/fedora.txt
@@ -1 +1 @@
-python-pickleshare
+python3-pickleshare
diff --git a/build/pkgs/pillow/distros/fedora.txt b/build/pkgs/pillow/distros/fedora.txt
@@ -1 +1 @@
-python-pillow
+python3-pillow
diff --git a/build/pkgs/pint/distros/fedora.txt b/build/pkgs/pint/distros/fedora.txt
@@ -0,0 +1 @@
+python3-pint
diff --git a/build/pkgs/pip/distros/fedora.txt b/build/pkgs/pip/distros/fedora.txt
@@ -1 +1 @@
-python-pip
+python3-pip
diff --git a/build/pkgs/pkgconfig/distros/fedora.txt b/build/pkgs/pkgconfig/distros/fedora.txt
@@ -1 +1 @@
-python-pkgconfig
+python3-pkgconfig
diff --git a/build/pkgs/plantri/distros/fedora.txt b/build/pkgs/plantri/distros/fedora.txt
@@ -0,0 +1 @@
+plantri