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METATRYP v. 1 Documentation

These tools are intended to help researchers answer questions about proteomics data. Written in Python 2.7 on a Unix operating system (linux/macOS).

The METATRYP software consists of:

1. a database, stored in a standalone SQLite file.
2. python libraries, for processing, ingesting, and analyzing data.
3. command-line scripts, to act as interfaces to the python libraries and the database.

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• Overview
• Installation Instructions
  • Download
  • Create virtual environment
  • Run tests
  • Initialize database
• Quick Usage Guide
  • Digest and ingest new taxa
  • Generate peptide redundancy tables
  • Remove taxa from database
• Tutorial
  • Taxa in Example Database
• Database Schema
• Directly query database via SQL