chore(deps): update codecov/codecov-action action to v5 #7450

Workflow file for this run

	name: Build

	on:
	schedule:
	- cron: '0 10 * * *' # every day at 10am
	push:
	tags:
	- 'v..*'
	pull_request:
	branches:
	- main
	merge_group:

	permissions: read-all

	jobs:
	fmt:
	runs-on: ubuntu-24.04

	steps:
	- name: Setup Clojure
	uses: DeLaGuardo/setup-clojure@94d767dbb80ae5c637d0f1ad70b75fa2b00495cd # 13.0
	with:
	cljfmt: 0.13.0

	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Check Formatting
	run: make fmt

	lint:
	runs-on: ubuntu-24.04

	steps:
	- name: Setup Clojure
	uses: DeLaGuardo/setup-clojure@94d767dbb80ae5c637d0f1ad70b75fa2b00495cd # 13.0
	with:
	clj-kondo: '2024.09.27'

	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Lint
	run: make lint

	job-ig:
	runs-on: ubuntu-24.04

	steps:
	- name: Setup Node
	uses: actions/setup-node@39370e3970a6d050c480ffad4ff0ed4d3fdee5af # v4
	with:
	node-version: 21

	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Build
	working-directory: job-ig
	run: make build

	- name: Validate
	working-directory: job-ig
	run: make validate

	- name: Upload Profiles
	uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4
	with:
	name: job-ig-profiles
	path: job-ig/fsh-generated/resources/*.json

	test:
	strategy:
	matrix:
	module:
	- admin-api
	- anomaly
	- async
	- byte-buffer
	- byte-string
	- cache-collector
	- cassandra
	- coll
	- cql
	- db
	- db-resource-store
	- db-resource-store-cassandra
	- db-tx-log
	- db-tx-log-kafka
	- executor
	- extern-terminology-service
	- fhir-client
	- fhir-path
	- fhir-structure
	- http-client
	- interaction
	- jepsen
	- job-async-interaction
	- job-re-index
	- job-scheduler
	- job-util
	- kv
	- luid
	- metrics
	- module-base
	- openid-auth
	- operation-graphql
	- operation-measure-evaluate-measure
	- operation-patient-everything
	- operation-patient-purge
	- operation-totals
	- page-id-cipher
	- page-store
	- page-store-cassandra
	- rest-api
	- rest-util
	- rocksdb
	- scheduler
	- server
	- thread-pool-executor-collector

	java-version:
	- '17'
	- '21'

	exclude:
	- module: jepsen
	java-version: '17'

	needs: job-ig
	runs-on: ubuntu-24.04

	steps:
	- name: Setup Java
	uses: actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b # v4
	with:
	distribution: 'temurin'
	java-version: ${{ matrix.java-version }}

	- name: Setup Clojure
	uses: DeLaGuardo/setup-clojure@94d767dbb80ae5c637d0f1ad70b75fa2b00495cd # 13.0
	with:
	cli: '1.12.0.1479'

	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Cache Local Maven Repo
	uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a # v4
	with:
	path: ~/.m2/repository
	key: ${{ runner.os }}-temurin-${{ matrix.java-version }}-maven-${{ matrix.module }}-${{ hashFiles(format('modules/{0}/deps.edn', matrix.module)) }}

	- name: Download Job IG Profiles
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: job-ig-profiles
	path: job-ig/fsh-generated/resources

	- name: Test
	run: make -C modules/${{ matrix.module }} test

	- name: Test Coverage
	if: ${{ matrix.java-version == '21' && matrix.module != 'db' && matrix.module != 'jepsen' }}
	run: make -C modules/${{ matrix.module }} test-coverage

	- name: Upload Coverage Report
	if: ${{ matrix.java-version == '21' && matrix.module != 'db' && matrix.module != 'jepsen' }}
	uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4
	with:
	name: coverage-report-${{ matrix.module }}
	path: modules/${{ matrix.module }}/target/coverage/codecov.json

	# Special treatment, because it runs much longer as the other modules.
	test-coverage-db:
	needs: job-ig
	runs-on: ubuntu-24.04

	steps:
	- name: Setup Java
	uses: actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b # v4
	with:
	distribution: 'temurin'
	java-version: '21'

	- name: Setup Clojure
	uses: DeLaGuardo/setup-clojure@94d767dbb80ae5c637d0f1ad70b75fa2b00495cd # 13.0
	with:
	cli: '1.12.0.1479'

	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Cache Local Maven Repo
	uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a # v4
	with:
	path: ~/.m2/repository
	key: ${{ runner.os }}-temurin-21-maven-db-coverage-${{ hashFiles('modules/db/deps.edn') }}

	- name: Download Job IG Profiles
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: job-ig-profiles
	path: job-ig/fsh-generated/resources

	- name: Test Coverage
	run: make -C modules/db test-coverage

	- name: Upload Coverage Report
	uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4
	with:
	name: coverage-report-db
	path: modules/db/target/coverage/codecov.json

	test-root:
	strategy:
	matrix:
	java-version:
	- '17'
	- '21'

	needs: job-ig
	runs-on: ubuntu-24.04

	steps:
	- name: Setup Java
	uses: actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b # v4
	with:
	distribution: 'temurin'
	java-version: ${{ matrix.java-version }}

	- name: Setup Clojure
	uses: DeLaGuardo/setup-clojure@94d767dbb80ae5c637d0f1ad70b75fa2b00495cd # 13.0
	with:
	cli: '1.12.0.1479'

	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Cache Local Maven Repo
	uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a # v4
	with:
	path: ~/.m2/repository
	key: ${{ runner.os }}-temurin-${{ matrix.java-version }}-maven-${{ hashFiles('deps.edn') }}

	- name: Download Job IG Profiles
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: job-ig-profiles
	path: job-ig/fsh-generated/resources

	- name: Test
	run: make test-root

	upload-coverage:
	needs: [ test, test-coverage-db ]
	runs-on: ubuntu-24.04

	steps:
	- name: Download Coverage Reports
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	pattern: coverage-report-*

	- name: Codecov Upload
	uses: codecov/codecov-action@015f24e6818733317a2da2edd6290ab26238649a # v5
	with:
	name: codecov-umbrella
	token: ${{ secrets.CODECOV_TOKEN }}
	fail_ci_if_error: true

	build:
	needs: job-ig
	runs-on: ubuntu-24.04

	steps:
	- name: Setup Java
	uses: actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b # v4
	with:
	distribution: 'temurin'
	java-version: '21'

	- name: Setup Clojure
	uses: DeLaGuardo/setup-clojure@94d767dbb80ae5c637d0f1ad70b75fa2b00495cd # 13.0
	with:
	cli: '1.12.0.1479'

	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Cache Local Maven Repo
	uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a # v4
	with:
	path: ~/.m2/repository
	key: ${{ runner.os }}-temurin-21-maven-build-${{ hashFiles('**/deps.edn') }}

	- name: Download Job IG Profiles
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: job-ig-profiles
	path: job-ig/fsh-generated/resources

	- name: Build Uberjar
	run: make uberjar

	- name: Upload Blaze Uberjar
	uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4
	with:
	name: blaze-uberjar
	path: target/blaze-*-standalone.jar

	- name: Set up Docker Buildx
	uses: docker/setup-buildx-action@c47758b77c9736f4b2ef4073d4d51994fabfe349 # v3

	- name: Build and Export to Docker
	uses: docker/build-push-action@4f58ea79222b3b9dc2c8bbdd6debcef730109a75 # v6
	with:
	context: .
	tags: blaze:latest
	outputs: type=docker,dest=/tmp/blaze.tar

	- name: Upload Blaze Image
	uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4
	with:
	name: blaze-image
	path: /tmp/blaze.tar

	build-frontend:
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Setup Node
	uses: actions/setup-node@39370e3970a6d050c480ffad4ff0ed4d3fdee5af # v4
	with:
	node-version: 21

	- name: Build Frontend
	run: make build-frontend

	- name: Set up Docker Buildx
	uses: docker/setup-buildx-action@c47758b77c9736f4b2ef4073d4d51994fabfe349 # v3

	- name: Build and Export to Docker
	uses: docker/build-push-action@4f58ea79222b3b9dc2c8bbdd6debcef730109a75 # v6
	with:
	context: modules/frontend
	tags: blaze-frontend:latest
	outputs: type=docker,dest=/tmp/blaze-frontend.tar

	- name: Upload Blaze Image
	uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4
	with:
	name: blaze-frontend-image
	path: /tmp/blaze-frontend.tar

	image-scan:
	needs: [ build, build-frontend ]
	runs-on: ubuntu-24.04
	permissions:
	security-events: write
	strategy:
	matrix:
	image:
	- blaze
	- blaze-frontend

	steps:
	- name: Download Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: ${{ matrix.image }}-image
	path: /tmp

	- name: Load Image
	run: docker load --input /tmp/${{ matrix.image }}.tar

	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Run Trivy Vulnerability Scanner
	uses: aquasecurity/trivy-action@18f2510ee396bbf400402947b394f2dd8c87dbb0 # 0.29.0
	with:
	image-ref: ${{ matrix.image }}:latest
	format: sarif
	output: trivy-results.sarif
	severity: 'CRITICAL,HIGH'
	timeout: '15m0s'
	env:
	TRIVY_DB_REPOSITORY: public.ecr.aws/aquasecurity/trivy-db:2
	TRIVY_JAVA_DB_REPOSITORY: public.ecr.aws/aquasecurity/trivy-java-db:1

	- name: Upload Trivy Scan Results to GitHub Security Tab
	if: ${{ (github.repository_owner == 'samply') \|\| (vars.IMAGE_SCAN_UPLOAD == 'true') }}
	uses: github/codeql-action/upload-sarif@f09c1c0a94de965c15400f5634aa42fac8fb8f88 # v3
	with:
	sarif_file: trivy-results.sarif

	cql-expr-cache-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Install Blazectl
	run: .github/scripts/install-blazectl.sh

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -e ENABLE_ADMIN_API=true -e CQL_EXPR_CACHE_SIZE=1000 -p 8080:8080 -p 8081:8081 -v blaze-data:/app/data blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs
	run: docker logs blaze

	- name: Check Capability Statement
	run: .github/scripts/check-capability-statement.sh

	- name: Ensure that the State of PatientLastChange Index is Current
	run: .github/scripts/check-patient-last-change-index-state.sh current

	- name: Load Data
	run: blazectl --no-progress --server http://localhost:8080/fhir upload .github/test-data/synthea

	- name: Prometheus Metrics
	run: .github/scripts/test-cql-expr-cache-metrics.sh

	- name: Check Total-Number of Resources are 92114
	run: .github/scripts/check-total-number-of-resources.sh 92114

	- name: Evaluate CQL Query 1
	run: .github/scripts/evaluate-measure.sh q1 56

	- name: Evaluate CQL Query 1 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q1 56

	- name: Evaluate CQL Query 1 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q1 56

	- name: Evaluate CQL Query 1 on Individual Patients
	run: .github/scripts/evaluate-patient-q1-measure.sh

	- name: Evaluate CQL Query 2
	run: .github/scripts/evaluate-measure.sh q2 42

	- name: Evaluate CQL Query 2 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q2 42

	- name: Evaluate CQL Query 2 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q2 42

	- name: Evaluate CQL Query 4
	run: .github/scripts/evaluate-measure.sh q4 0

	- name: Evaluate CQL Query 4 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q4 0

	- name: Evaluate CQL Query 4 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q4 0

	- name: Evaluate CQL Query 7
	run: .github/scripts/evaluate-measure.sh q7 81

	- name: Evaluate CQL Query 7 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q7 81

	- name: Evaluate CQL Query 7 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q7 81

	- name: Evaluate CQL Query 14
	run: .github/scripts/evaluate-measure.sh q14 96

	- name: Check Bloom Filter
	run: .github/scripts/check-bloom-filter.sh a08d0235112a8033c36c5d33564aaa00f4190281e4db8f7ec1d8d55cd7f4c56f 96

	- name: Evaluate CQL Query 14 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q14 96

	- name: Evaluate CQL Query 14 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q14 96

	- name: Evaluate CQL Query 17
	run: .github/scripts/evaluate-measure.sh q17 120

	- name: Evaluate CQL Query 17 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q17 120

	- name: Evaluate CQL Query 17 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q17 120

	- name: Evaluate CQL Query 20 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl-stratifier.sh q20-stratifier-city 120

	- name: Evaluate CQL Query 21 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl-stratifier.sh q21-stratifier-city-of-only-women 64

	- name: Evaluate CQL Query 26 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl-stratifier.sh q26-stratifier-bmi 120

	- name: Evaluate CQL Query 27 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl-stratifier.sh q27-stratifier-calculated-bmi 120

	- name: Evaluate CQL Query 32 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl-stratifier.sh q32-stratifier-underweight 120

	- name: Evaluate CQL Query 36
	run: .github/scripts/evaluate-measure.sh q36-parameter 86

	- name: Check Bloom Filter
	run: .github/scripts/check-bloom-filter.sh fbb79d85457069c8e1926c949690deecd60d751942d5b0cd0b61c08e6029224c 86

	- name: Evaluate CQL Query 36 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q36-parameter 86

	- name: Evaluate CQL Query 37
	run: .github/scripts/evaluate-measure.sh q37-overlaps 24

	- name: Check Bloom Filter
	run: .github/scripts/check-bloom-filter.sh 9fe779d821d7647831331b490939aa0cdf314d76c9b2a9518ffaf559353db043 24

	- name: Evaluate CQL Query 37 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q37-overlaps 24

	- name: Evaluate CQL Query 37 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q37-overlaps 24

	- name: Evaluate CQL Query 46
	run: .github/scripts/evaluate-measure.sh q46-between-date 19

	- name: Check Bloom Filter
	run: .github/scripts/check-bloom-filter.sh 237bcfac3e879272f508e143095e4a0025e1b54505bbb2cf36fbda83dec237f2 19

	- name: Evaluate CQL Query 46 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q46-between-date 19

	integration-test:
	needs: build
	runs-on: ubuntu-24.04

	strategy:
	matrix:
	variant:
	- standalone
	- distributed

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Install Blazectl
	run: .github/scripts/install-blazectl.sh

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -e ALLOW_MULTIPLE_DELETE=true -e ENABLE_INTERACTION_DELETE_HISTORY=true -e ENABLE_OPERATION_PATIENT_PURGE=true -p 8080:8080 -p 8081:8081 --read-only --tmpfs /tmp:exec -v blaze-data:/app/data blaze:latest
	if: ${{ matrix.variant == 'standalone' }}

	- name: Run Kafka, Cassandra and Blaze
	run: docker compose -f .github/distributed-test/docker-compose.yml up -d
	if: ${{ matrix.variant == 'distributed' }}

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health
	if: ${{ matrix.variant == 'standalone' }}

	- name: Wait for Blaze 1
	run: .github/scripts/wait-for-url.sh http://localhost:8081/metrics
	if: ${{ matrix.variant == 'distributed' }}

	- name: Wait for Blaze 2
	run: .github/scripts/wait-for-url.sh http://localhost:8082/metrics
	if: ${{ matrix.variant == 'distributed' }}

	- name: Docker Logs
	run: docker logs blaze
	if: ${{ matrix.variant == 'standalone' }}

	- name: Docker Logs Kafka
	run: docker compose -f .github/distributed-test/docker-compose.yml logs kafka
	if: ${{ matrix.variant == 'distributed' }}

	- name: Docker Logs Cassandra 1
	run: docker compose -f .github/distributed-test/docker-compose.yml logs cassandra-1
	if: ${{ matrix.variant == 'distributed' }}

	- name: Docker Logs Cassandra 2
	run: docker compose -f .github/distributed-test/docker-compose.yml logs cassandra-2
	if: ${{ matrix.variant == 'distributed' }}

	- name: Docker Logs Blaze 1
	run: docker compose -f .github/distributed-test/docker-compose.yml logs blaze-1
	if: ${{ matrix.variant == 'distributed' }}

	- name: Docker Logs Blaze 2
	run: docker compose -f .github/distributed-test/docker-compose.yml logs blaze-2
	if: ${{ matrix.variant == 'distributed' }}

	- name: Docker Stats
	run: docker stats --no-stream

	- name: Check Capability Statement
	run: .github/scripts/check-capability-statement.sh

	- name: Check Capability Statement Filtered by _elements
	run: .github/scripts/check-capability-statement-filtered.sh

	- name: Check Capability Statement Caching
	run: .github/scripts/check-capability-statement-caching.sh

	- name: Check Referential Integrity Enforced
	run: .github/scripts/check-referential-integrity-enforced.sh

	- name: Load Data
	run: blazectl --no-progress --server http://localhost:8080/fhir upload .github/test-data/synthea

	- name: Check Total-Number of Resources are 92114
	run: .github/scripts/check-total-number-of-resources.sh 92114

	- name: Check Resource Totals
	run: .github/scripts/check-resource-totals.sh

	- name: Count Resources
	run: blazectl count-resources --server http://localhost:8080/fhir

	- name: Download All Resources
	run: .github/scripts/download-all-resources.sh

	- name: Download Patient Resources
	run: .github/scripts/download-resources.sh Patient

	- name: Download Male Patient Resources
	run: .github/scripts/download-resources-query.sh Patient "gender=male" 56

	- name: Download Female Patient Resources
	run: .github/scripts/download-resources-query.sh Patient "gender=female" 64

	- name: Download Patient Resources - Including Observation, Condition, Encounter and Procedure
	run: .github/scripts/revinclude.sh

	- name: Download Observation Resources
	run: .github/scripts/download-resources.sh Observation

	- name: Download Observation Resources with special LOINC Codes
	run: .github/scripts/download-resources-query.sh Observation "code=http://loinc.org\|10230-1,http://loinc.org\|10480-2,http://loinc.org\|10834-0,http://loinc.org\|14804-9,http://loinc.org\|14959-1,http://loinc.org\|1742-6,http://loinc.org\|1751-7,http://loinc.org\|17861-6,http://loinc.org\|18262-6,http://loinc.org\|19123-9" 2399

	- name: Download Observation Resources with all LOINC Codes
	run: .github/scripts/download-resources-query.sh Observation "_count=500&code=http://loinc.org\|10230-1,http://loinc.org\|10480-2,http://loinc.org\|10834-0,http://loinc.org\|14804-9,http://loinc.org\|14959-1,http://loinc.org\|1742-6,http://loinc.org\|1751-7,http://loinc.org\|17861-6,http://loinc.org\|18262-6,http://loinc.org\|19123-9,http://loinc.org\|1920-8,http://loinc.org\|1960-4,http://loinc.org\|1975-2,http://loinc.org\|1988-5,http://loinc.org\|19926-5,http://loinc.org\|19994-3,http://loinc.org\|2019-8,http://loinc.org\|2028-9,http://loinc.org\|20454-5,http://loinc.org\|20505-4,http://loinc.org\|20565-8,http://loinc.org\|20570-8,http://loinc.org\|2069-3,http://loinc.org\|2075-0,http://loinc.org\|2085-9,http://loinc.org\|2093-3,http://loinc.org\|21000-5,http://loinc.org\|2157-6,http://loinc.org\|2160-0,http://loinc.org\|21905-5,http://loinc.org\|21906-3,http://loinc.org\|21907-1,http://loinc.org\|21908-9,http://loinc.org\|2276-4,http://loinc.org\|2339-0,http://loinc.org\|2345-7,http://loinc.org\|2498-4,http://loinc.org\|2500-7,http://loinc.org\|2502-3,http://loinc.org\|2514-8,http://loinc.org\|2532-0,http://loinc.org\|25428-4,http://loinc.org\|2571-8,http://loinc.org\|26881-3,http://loinc.org\|2703-7,http://loinc.org\|2708-6,http://loinc.org\|2713-6,http://loinc.org\|2744-1,http://loinc.org\|2823-3,http://loinc.org\|28245-9,http://loinc.org\|2857-1,http://loinc.org\|2885-2,http://loinc.org\|29463-7,http://loinc.org\|2947-0,http://loinc.org\|2951-2,http://loinc.org\|3094-0,http://loinc.org\|32167-9,http://loinc.org\|32207-3,http://loinc.org\|32465-7,http://loinc.org\|32623-1,http://loinc.org\|33728-7,http://loinc.org\|33756-8,http://loinc.org\|33762-6,http://loinc.org\|33914-3,http://loinc.org\|33959-8,http://loinc.org\|38208-5,http://loinc.org\|38265-5,http://loinc.org\|38483-4,http://loinc.org\|39156-5,http://loinc.org\|44667-4,http://loinc.org\|44963-7,http://loinc.org\|4544-3,http://loinc.org\|4548-4,http://loinc.org\|46240-8,http://loinc.org\|46288-7,http://loinc.org\|48065-7,http://loinc.org\|49765-1,http://loinc.org\|55277-8,http://loinc.org\|5767-9,http://loinc.org\|5770-3,http://loinc.org\|5778-6,http://loinc.org\|57905-2,http://loinc.org\|5792-7,http://loinc.org\|5794-3,http://loinc.org\|5797-6,http://loinc.org\|5799-2,http://loinc.org\|5802-4,http://loinc.org\|5803-2,http://loinc.org\|5804-0,http://loinc.org\|5811-5,http://loinc.org\|5902-2,http://loinc.org\|59032-3,http://loinc.org\|5905-5,http://loinc.org\|59408-5,http://loinc.org\|59557-9,http://loinc.org\|59576-9,http://loinc.org\|6075-6,http://loinc.org\|6082-2,http://loinc.org\|6085-5,http://loinc.org\|6095-4,http://loinc.org\|6106-9,http://loinc.org\|6158-0,http://loinc.org\|6189-5,http://loinc.org\|6206-7,http://loinc.org\|6246-3,http://loinc.org\|6248-9,http://loinc.org\|6273-7,http://loinc.org\|6276-0,http://loinc.org\|6298-4,http://loinc.org\|6299-2,http://loinc.org\|6301-6,http://loinc.org\|63513-6,http://loinc.org\|65750-2,http://loinc.org\|66519-0,http://loinc.org\|66524-0,http://loinc.org\|66529-9,http://loinc.org\|66534-9,http://loinc.org\|6690-2,http://loinc.org\|6768-6,http://loinc.org\|6833-8,http://loinc.org\|6844-5,http://loinc.org\|69453-9,http://loinc.org\|704-7,http://loinc.org\|706-2,http://loinc.org\|711-2,http://loinc.org\|713-8,http://loinc.org\|718-7,http://loinc.org\|71802-3,http://loinc.org\|72106-8,http://loinc.org\|72166-2,http://loinc.org\|72514-3,http://loinc.org\|7258-7,http://loinc.org\|731-0,http://loinc.org\|736-9,http://loinc.org\|742-7,http://loinc.org\|751-8,http://loinc.org\|75325-1,http://loinc.org\|76690-7,http://loinc.org\|770-8,http://loinc.org\|77606-2,http://loinc.org\|777-3,http://loinc.org\|785-6,http://loinc.org\|786-4,http://loinc.org\|787-2,http://loinc.org\|788-0,http://loinc.org\|789-8,http://loinc.org\|80382-5,http://loinc.org\|80383-3,http://loinc.org\|8302-2,http://loinc.org\|8310-5,http://loinc.org\|8331-1,http://loinc.org\|8478-0,http://loinc.org\|85318-4,http://loinc.org\|85319-2,http://loinc.org\|85337-4,http://loinc.org\|85339-0,http://loinc.org\|85352-3,http://loinc.org\|85354-9,http://loinc.org\|88020-3,http://loinc.org\|88021-1,http://loinc.org\|88040-1,http://loinc.org\|88262-1,http://loinc.org\|8867-4,http://loinc.org\|89579-7,http://loinc.org\|91148-7,http://loinc.org\|92130-4,http://loinc.org\|92131-2,http://loinc.org\|92134-6,http://loinc.org\|92138-7,http://loinc.org\|92139-5,http://loinc.org\|92140-3,http://loinc.org\|92141-1,http://loinc.org\|92142-9,http://loinc.org\|9279-1,http://loinc.org\|94040-3,http://loinc.org\|94531-1,http://loinc.org\|9843-4,http://loinc.org\|99999-0" 42929

	- name: Download Observation Resources of male Patients
	run: .github/scripts/download-resources-query.sh Observation "patient.gender=male" 20466

	- name: Download Observation Resources of male Patients Sorted by ID
	run: .github/scripts/download-resources-query-sort.sh Observation "patient.gender=male" "_id" 20466

	- name: Download Observation Resources of male Patients Sorted Ascending by Last Updated
	run: .github/scripts/download-resources-query-sort.sh Observation "patient.gender=male" "_lastUpdated" 20466

	- name: Download Observation Resources of male Patients Sorted Descending by Last Updated
	run: .github/scripts/download-resources-query-sort.sh Observation "patient.gender=male" "-_lastUpdated" 20466

	- name: Download Laboratory Observation Resources Sorted by ID
	run: .github/scripts/download-resources-query-sort.sh Observation "category=laboratory" "_id" 29206

	- name: Download Laboratory Observation Resources Sorted Ascending by Last Updated
	run: .github/scripts/download-resources-query-sort.sh Observation "category=laboratory" "_lastUpdated" 29206

	- name: Download Observation Resources of female Patients
	run: .github/scripts/download-resources-query.sh Observation "_count=500&patient.gender=female" 22463

	- name: Download Observation Resources of the year 1970
	run: .github/scripts/download-resources-query.sh Observation "date=1970" 59

	- name: Download Observation Resources of the year 1970 Sorted by ID
	run: .github/scripts/download-resources-query-sort.sh Observation "date=1970" "_id" 59

	- name: Download Observation Resources of the year 1980
	run: .github/scripts/download-resources-query.sh Observation "date=1980" 0

	- name: Download Observation Resources of the year 1980 Sorted by ID
	run: .github/scripts/download-resources-query-sort.sh Observation "date=1980" "_id" 0

	- name: Download Observation Resources of the year 1990
	run: .github/scripts/download-resources-query.sh Observation "date=1990" 19

	- name: Download Observation Resources of the year 2000
	run: .github/scripts/download-resources-query.sh Observation "date=2000" 101

	- name: Download Observation Resources of the year 2010
	run: .github/scripts/download-resources-query.sh Observation "date=2010" 995

	- name: Download Observation Resources of the year 2020
	run: .github/scripts/download-resources-query.sh Observation "date=2020" 17419

	- name: Download Observation Resources of the year 2020 Sorted by ID
	run: .github/scripts/download-resources-query-sort.sh Observation "date=2020" "_id" 17419

	- name: Download Observation Resources not of the year 2020
	run: .github/scripts/download-resources-query.sh Observation "date=ne2020" 25510

	- name: Download Observation Resources not of the year 2020 Sorted by ID
	run: .github/scripts/download-resources-query-sort.sh Observation "date=ne2020" "_id" 25510

	- name: Download Observation Resources greater than the year 2010
	run: .github/scripts/download-resources-query.sh Observation "date=gt2010" 38486

	- name: Download Observation Resources greater than the year 2020
	run: .github/scripts/download-resources-query.sh Observation "date=gt2020" 983

	- name: Download Observation Resources less than the year 2010
	run: .github/scripts/download-resources-query.sh Observation "date=lt2010" 3448

	- name: Download Observation Resources less than the year 2020
	run: .github/scripts/download-resources-query.sh Observation "date=lt2020" 24527

	- name: Download Observation Resources greater equal the year 2010
	run: .github/scripts/download-resources-query.sh Observation "date=ge2010" 39481

	- name: Download Observation Resources greater equal the year 2020
	run: .github/scripts/download-resources-query.sh Observation "date=ge2020" 18402

	- name: Download Observation Resources less equal the year 2010
	run: .github/scripts/download-resources-query.sh Observation "date=le2010" 4443

	- name: Download Observation Resources less equal the year 2020
	run: .github/scripts/download-resources-query.sh Observation "date=le2020" 41946

	- name: Download Observation Resources that start after the year 2010
	run: .github/scripts/download-resources-query.sh Observation "date=sa2010" 38486

	- name: Download Observation Resources that start after the year 2020
	run: .github/scripts/download-resources-query.sh Observation "date=sa2020" 983

	- name: Download Observation Resources that end before the year 2010
	run: .github/scripts/download-resources-query.sh Observation "date=eb2010" 3448

	- name: Download Observation Resources that end before the year 2020
	run: .github/scripts/download-resources-query.sh Observation "date=eb2020" 24527

	- name: Check Observation Date Search
	run: .github/scripts/check-date-search.sh "Observation"

	- name: Check Encounter Date Search
	run: .github/scripts/check-date-search.sh "Encounter"

	- name: Check DiagnosticReport Date Search
	run: .github/scripts/check-date-search.sh "DiagnosticReport"

	- name: Download Observation Resources of female Patients Sorted Ascending
	run: .github/scripts/download-resources-query-sort.sh Observation "patient.gender=female" "_lastUpdated" 22463

	- name: Download Observation Resources of female Patients Sorted Descending
	run: .github/scripts/download-resources-query-sort.sh Observation "patient.gender=female" "-_lastUpdated" 22463

	- name: Download Observation Resources - Including Patients
	run: blazectl --no-progress --server http://localhost:8080/fhir download Observation -q '_include=Observation:patient' -o Observation-Patient.ndjson

	- name: Download Observation Resources - Including Encounters and Patients
	run: blazectl --no-progress --server http://localhost:8080/fhir download Observation -q '_include=Observation:encounter&_include=Observation:patient' -o Observation-Encounter-Patient.ndjson

	- name: Download Observation Resources - Including Encounters and Encounter Patients
	run: blazectl --no-progress --server http://localhost:8080/fhir download Observation -q '_include=Observation:encounter&_include:iterate=Encounter:patient' -o Observation-Encounter-Encounter-Patient.ndjson

	- name: Download Condition Resources
	run: .github/scripts/download-resources.sh Condition

	- name: Download Condition Resources - Including Subjects
	run: blazectl --no-progress --server http://localhost:8080/fhir download Condition -q '_include=Condition:subject' -o Condition-Subject.ndjson

	- name: Download Condition Resources - Including Encounters
	run: blazectl --no-progress --server http://localhost:8080/fhir download Condition -q '_include=Condition:encounter' -o Condition-Encounter.ndjson

	- name: Download DiagnosticReport Resources
	run: .github/scripts/download-resources.sh DiagnosticReport

	- name: Download MedicationRequest Resources of Medications with code 854235
	run: .github/scripts/download-resources-query.sh MedicationRequest "medication.code=1736854" 112

	- name: Download MedicationRequest Resources of Medications with code 854235 Sorted Ascending
	run: .github/scripts/download-resources-query-sort.sh MedicationRequest "medication.code=1736854" "_lastUpdated" 112

	- name: Download MedicationRequest Resources of Medications with code 854235 Sorted Descending
	run: .github/scripts/download-resources-query-sort.sh MedicationRequest "medication.code=1736854" "-_lastUpdated" 112

	- name: Download MedicationRequest Resources - Including Medications
	run: blazectl --no-progress --server http://localhost:8080/fhir download MedicationRequest -q '_include=MedicationRequest:medication' -o MedicationRequest.ndjson

	- name: Download male Patient Resources having inpatient Encounters in 2010
	run: .github/scripts/download-resources-query.sh Patient "gender=male&_has:Encounter:patient:class=IMP&_has:Encounter:patient:date=2010" 8

	- name: Download female Patient Resources having inpatient Encounters in 2010
	run: .github/scripts/download-resources-query.sh Patient "gender=female&_has:Encounter:patient:class=IMP&_has:Encounter:patient:date=2010" 11

	- name: Download Observations using _elements=subject
	run: .github/scripts/download-observations-elements.sh

	- name: Download Observations of all Encounters using ID's
	run: .github/scripts/download-observations-of-all-encounters.sh

	- name: Search Observation _lastUpdated
	run: .github/scripts/search-patient-last-updated.sh

	- name: Search Observation _profile
	run: .github/scripts/search-observation-profile.sh

	- name: Search Compartment
	run: .github/scripts/search-compartment.sh

	- name: Evaluate CQL Query 1
	run: .github/scripts/evaluate-measure.sh q1 56

	- name: Evaluate CQL Query 1 as Batch
	run: .github/scripts/evaluate-measure-as-batch.sh q1 56

	- name: Evaluate CQL Query 1 async
	run: .github/scripts/evaluate-measure-async.sh q1 56

	- name: Evaluate CQL Query 1 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q1 56

	- name: Evaluate CQL Query 1 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q1 56

	- name: Evaluate CQL Query 1 - Subject List as Batch
	run: .github/scripts/evaluate-measure-subject-list-as-batch.sh q1 56

	- name: Evaluate CQL Query 1 on Individual Patients
	run: .github/scripts/evaluate-patient-q1-measure.sh

	- name: Evaluate CQL Query 2
	run: .github/scripts/evaluate-measure.sh q2 42

	- name: Evaluate CQL Query 2 as Batch
	run: .github/scripts/evaluate-measure-as-batch.sh q2 42

	- name: Evaluate CQL Query 2 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q2 42

	- name: Evaluate CQL Query 2 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q2 42

	- name: Evaluate CQL Query 2 - Subject List as Batch
	run: .github/scripts/evaluate-measure-subject-list-as-batch.sh q2 42

	- name: Evaluate CQL Query 4
	run: .github/scripts/evaluate-measure.sh q4 0

	- name: Evaluate CQL Query 4 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q4 0

	- name: Evaluate CQL Query 4 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q4 0

	- name: Evaluate CQL Query 7
	run: .github/scripts/evaluate-measure.sh q7 81

	- name: Evaluate CQL Query 7 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q7 81

	- name: Evaluate CQL Query 7 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q7 81

	- name: Evaluate CQL Query 14
	run: .github/scripts/evaluate-measure.sh q14 96

	- name: Evaluate CQL Query 14 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q14 96

	- name: Evaluate CQL Query 14 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q14 96

	- name: Evaluate CQL Query 15 using Blazectl
	run: .github/scripts/evaluate-measure.sh q15 31

	- name: Evaluate CQL Query 17
	run: .github/scripts/evaluate-measure.sh q17 120

	- name: Evaluate CQL Query 17 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q17 120

	- name: Evaluate CQL Query 17 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q17 120

	- name: Evaluate CQL Query 20 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl-stratifier.sh q20-stratifier-city 120

	- name: Evaluate CQL Query 21 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl-stratifier.sh q21-stratifier-city-of-only-women 64

	- name: Evaluate CQL Query 26 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl-stratifier.sh q26-stratifier-bmi 120

	- name: Evaluate CQL Query 27 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl-stratifier.sh q27-stratifier-calculated-bmi 120

	- name: Evaluate CQL Query 32 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl-stratifier.sh q32-stratifier-underweight 120

	- name: Evaluate CQL Query 36
	run: .github/scripts/evaluate-measure.sh q36-parameter 86

	- name: Evaluate CQL Query 36 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q36-parameter 86

	- name: Evaluate CQL Query 34
	run: .github/scripts/evaluate-measure.sh q37-overlaps 24

	- name: Evaluate CQL Query 34 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q37-overlaps 24

	- name: Evaluate CQL Query 34 - Subject List
	run: .github/scripts/evaluate-measure-subject-list.sh q37-overlaps 24

	- name: Evaluate CQL Query 46
	run: .github/scripts/evaluate-measure.sh q46-between-date 19

	- name: Evaluate CQL Query 46 using Blazectl
	run: .github/scripts/evaluate-measure-blazectl.sh q46-between-date 19

	- name: Forwarded Header HTTPS
	run: .github/scripts/forwarded-header.sh https

	- name: Forwarded Header HTTP
	run: .github/scripts/forwarded-header.sh http

	- name: X-Forwarded Headers HTTPS
	run: .github/scripts/x-forwarded-headers.sh https

	- name: X-Forwarded Headers HTTP
	run: .github/scripts/x-forwarded-headers.sh http

	- name: Delete
	run: .github/scripts/delete.sh

	- name: Delete Violating Referential Integrity
	run: .github/scripts/check-referential-integrity-for-delete.sh 409

	- name: Delete After Referring Resource is Deleted Succeeds
	run: .github/scripts/check-delete-succeeds-after-referring-resource-is-deleted.sh

	- name: Batch
	run: .github/scripts/batch.sh

	- name: Batch Metadata
	run: .github/scripts/batch-metadata.sh

	- name: Transaction
	run: .github/scripts/transaction.sh

	- name: Transaction Read/Write
	run: .github/scripts/transaction-rw.sh

	- name: Transactional Delete Preserving Referential Integrity
	run: .github/scripts/transactional-delete.sh

	- name: Transaction with Invalid (Null) Resource
	run: .github/scripts/transaction-null-resource.sh

	- name: OPTIONS
	run: curl -f -XOPTIONS http://localhost:8080/fhir/metadata

	- name: Health
	run: curl -f http://localhost:8080/health

	- name: Health - HEAD
	run: curl -f --head http://localhost:8080/health

	- name: Not Acceptable
	run: .github/scripts/not-acceptable.sh

	- name: Conditional Update If-None-Match
	run: .github/scripts/conditional-update-if-none-match.sh

	- name: GraphQL Patient
	run: .github/scripts/graphql.sh Patient

	- name: GraphQL Observation
	run: .github/scripts/graphql.sh Observation

	- name: Link Header Encoding
	run: .github/scripts/link-header-encoding.sh

	- name: Paging uses a Stable Snapshot of the Database (Patient)
	run: .github/scripts/follow-patient-next-link-after-write.sh

	- name: Paging uses a Stable Snapshot of the Database (system)
	run: .github/scripts/follow-system-next-link-after-write.sh

	- name: Create Patient
	run: .github/scripts/create-patient.sh

	- name: Read Ignores T
	run: .github/scripts/read-ignores-t.sh

	- name: Patient Everything
	run: .github/scripts/patient-everything.sh

	- name: Patient Everything with Date Range
	run: .github/scripts/patient-everything-date-range.sh

	- name: Patient Everything Paged
	run: .github/scripts/patient-everything-paged.sh

	- name: Patient Everything Paged with Date Range
	run: .github/scripts/patient-everything-paged-date-range.sh

	- name: Patient Identical Update
	run: .github/scripts/patient-identical-update.sh

	- name: System History
	run: .github/scripts/system-history-paged.sh

	- name: Patient History
	run: .github/scripts/patient-history-paged.sh

	- name: Patient X79746011X History
	run: .github/scripts/single-patient-history.sh X79746011X

	- name: History Paging uses a Stable Snapshot of the Database (system)
	run: .github/scripts/follow-system-history-next-link-after-write.sh

	- name: History Paging uses a Stable Snapshot of the Database (Patient)
	run: .github/scripts/follow-patient-history-next-link-after-write.sh

	- name: History Paging uses a Stable Snapshot of the Database (single Patient)
	run: .github/scripts/follow-single-patient-history-next-link-after-write.sh

	- name: Count Async 17861-6
	run: .github/scripts/count-async.sh "17861-6" "299"

	- name: Count Async 8310-5
	run: .github/scripts/count-async.sh "8310-5" "512"

	- name: Cancel Async Query
	run: .github/scripts/cancel-async.sh

	- name: Search _tag
	run: .github/scripts/search-tag.sh

	- name: Conditional Delete - Check Referential Integrity Violated
	run: .github/scripts/conditional-delete-type/check-referential-integrity-violated.sh

	- name: Conditional Delete - Delete All Provenance Resources
	run: .github/scripts/conditional-delete-type/delete-all-resources-of-type.sh "Provenance"

	- name: Conditional Delete - Delete All Observation Resources Fails
	run: .github/scripts/conditional-delete-type/delete-all-observation-resources-fails.sh

	- name: Create Patient With Ancient Birth Year
	run: .github/scripts/create-patient-with-ancient-birth-year.sh

	- name: Delete History
	run: .github/scripts/delete-history.sh

	- name: Conditional Delete - Delete All List Resources
	run: .github/scripts/conditional-delete-type/delete-all-resources-of-type.sh "List"

	- name: Patient Purge
	run: .github/scripts/patient-purge.sh

	- name: Prometheus Metrics
	run: .github/scripts/test-metrics.sh
	if: ${{ matrix.variant == 'standalone' }}

	- name: Prometheus Metrics - Blaze 1
	run: curl -sf http://localhost:8081/metrics
	if: ${{ matrix.variant == 'distributed' }}

	- name: Prometheus Metrics - Blaze 2
	run: curl -sf http://localhost:8082/metrics
	if: ${{ matrix.variant == 'distributed' }}

	- name: Docker Stats
	run: docker stats --no-stream

	integration-test-synthea-1000:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Install Blazectl
	run: .github/scripts/install-blazectl.sh

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -e DB_BLOCK_CACHE_SIZE=2048 -e ENABLE_ADMIN_API=true -p 8080:8080 --read-only --tmpfs /tmp:exec -v blaze-data:/app/data blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs
	run: docker logs blaze

	- name: Check Capability Statement
	run: .github/scripts/check-capability-statement.sh

	- name: Check Referential Integrity Enforced
	run: .github/scripts/check-referential-integrity-enforced.sh

	- name: Download Synthea Test Data
	run: wget https://speicherwolke.uni-leipzig.de/index.php/s/kDsa2ifeMFdqK35/download/synthea-1000.tar

	- name: Create Synthea Test Data Dir
	run: mkdir test-data-synthea-1000

	- name: Unpack Synthea Test Data
	run: tar -C test-data-synthea-1000 -xf synthea-1000.tar

	- name: Load Data
	run: blazectl --no-progress --server http://localhost:8080/fhir upload test-data-synthea-1000

	- name: Compact All Column Families
	run: .github/scripts/compact-all.sh

	- name: Check Total-Number of Resources are 1099594
	run: .github/scripts/check-total-number-of-resources.sh 1099594

	- name: Count the number of Patients with Stress Conditions at Inpatient Encounters using FHIR Search
	run: .github/scripts/count-patients.sh Condition "code=http://snomed.info/sct\|73595000&encounter.class=http://terminology.hl7.org/CodeSystem/v3-ActCode\|IMP" 13

	- name: Count the number of Patients with Stress Conditions at Inpatient Encounters using CQL
	run: .github/scripts/evaluate-measure-blazectl.sh inpatient-stress 13

	- name: Condition Code Stratifier
	run: .github/scripts/evaluate-measure-blazectl-stratifier.sh stratifier-condition-code 51599

	- name: Patient Everything Too Costly
	run: .github/scripts/patient-everything-too-costly.sh

	- name: Patient Everything Paged
	run: .github/scripts/patient-everything-paged-1000.sh

	- name: Docker Stats
	run: docker stats --no-stream

	integration-test-patient-purge:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Install Blazectl
	run: .github/scripts/install-blazectl.sh

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -e DB_BLOCK_CACHE_SIZE=512 -e ENABLE_OPERATION_PATIENT_PURGE=true -p 8080:8080 --read-only --tmpfs /tmp:exec -v blaze-data:/app/data blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs
	run: docker logs blaze

	- name: Check Capability Statement
	run: .github/scripts/check-capability-statement.sh

	- name: Check Referential Integrity Enforced
	run: .github/scripts/check-referential-integrity-enforced.sh

	- name: Load Data
	run: blazectl --no-progress --server http://localhost:8080/fhir upload .github/test-data/synthea

	- name: Check Total-Number of Resources are 92114
	run: .github/scripts/check-total-number-of-resources.sh 92114

	- name: Patient Purge all
	run: .github/scripts/patient-purge-all.sh

	- name: Download All Resources
	run: .github/scripts/download-all-resources.sh

	- name: Download Patient Resources
	run: .github/scripts/download-resources.sh Patient

	- name: Check Resource Totals
	run: .github/scripts/check-resource-totals-after-patient-purge.sh

	- name: Docker Stats
	run: docker stats --no-stream

	not-enforcing-referential-integrity-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Install Blazectl
	run: .github/scripts/install-blazectl.sh

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -e ENFORCE_REFERENTIAL_INTEGRITY=false -p 8080:8080 --read-only --tmpfs /tmp:exec -v blaze-data:/app/data blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs
	run: docker logs blaze

	- name: Check Capability Statement
	run: .github/scripts/check-capability-statement.sh

	- name: Check Referential Integrity Not Enforced
	run: .github/scripts/check-referential-integrity-not-enforced.sh

	- name: Load Data
	run: blazectl --no-progress --server http://localhost:8080/fhir upload -c1 .github/test-data/etl

	- name: Check Total-Number of Resources are 5
	run: .github/scripts/check-total-number-of-resources.sh 5

	- name: Check Referential Integrity Not Enforced For Delete
	run: .github/scripts/check-referential-integrity-for-delete.sh 204

	admin-api-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Install Blazectl
	run: .github/scripts/install-blazectl.sh

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -e ENABLE_ADMIN_API=true -p 8080:8080 --read-only --tmpfs /tmp:exec -v blaze-data:/app/data blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs
	run: docker logs blaze

	- name: Create Invalid Jobs
	run: .github/scripts/admin-api/create-invalid-jobs.sh

	- name: Create Async Job
	run: .github/scripts/admin-api/async-job.sh

	- name: Load Data
	run: blazectl --no-progress --server http://localhost:8080/fhir upload .github/test-data/synthea

	- name: Compact Unknown Database
	run: .github/scripts/compact-unknown-database.sh

	# This test uploads many small transactions in order to show that Blaze can handle many small requests containing
	# chunked payload blazectl uses. Versions of Blaze from 0.13.2 to 0.15.3, starting with the migration to Jetty, had
	# the problem that the JSON parser did not read the entire inputstream so that terminal chunks could remain, which
	# caused Jetty to close the stream.
	small-transactions-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Install Blazectl
	run: .github/scripts/install-blazectl.sh

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -p 8080:8080 --read-only --tmpfs /tmp:exec -v blaze-data:/app/data blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs
	run: docker logs blaze

	- name: Check Capability Statement
	run: .github/scripts/check-capability-statement.sh

	- name: Generate Test Data
	run: mkdir .github/test-data/small-txs && .github/scripts/gen-bundle-ndjson.sh > .github/test-data/small-txs/bundles.ndjson

	- name: Load Data Sequentially
	run: blazectl --no-progress --server http://localhost:8080/fhir upload -c 1 .github/test-data/small-txs

	- name: Load Data with Concurrency 2
	run: blazectl --no-progress --server http://localhost:8080/fhir upload -c 2 .github/test-data/small-txs

	big-transaction-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Install Blazectl
	run: .github/scripts/install-blazectl.sh

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -p 8080:8080 --read-only --tmpfs /tmp:exec -v blaze-data:/app/data blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs
	run: docker logs blaze

	- name: Check Capability Statement
	run: .github/scripts/check-capability-statement.sh

	- name: Load Data
	run: blazectl --no-progress --server http://localhost:8080/fhir upload .github/test-data/big-tx

	evaluate-measure-timeout-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Install Blazectl
	run: .github/scripts/install-blazectl.sh

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -e FHIR_OPERATION_EVALUATE_MEASURE_TIMEOUT=10 -p 8080:8080 --read-only --tmpfs /tmp:exec -v blaze-data:/app/data blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs
	run: docker logs blaze

	- name: Check Capability Statement
	run: .github/scripts/check-capability-statement.sh

	- name: Load Data
	run: blazectl --no-progress --server http://localhost:8080/fhir upload .github/test-data/synthea

	- name: Evaluate CQL Query 1
	run: .github/scripts/evaluate-measure-timeout.sh q1

	include-without-referential-integrity-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -e ENFORCE_REFERENTIAL_INTEGRITY=false -p 8080:8080 --read-only --tmpfs /tmp:exec -v blaze-data:/app/data blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs
	run: docker logs blaze

	- name: Test Include
	run: .github/scripts/include-without-referential-integrity.sh

	chaining-without-referential-integrity-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -e ENFORCE_REFERENTIAL_INTEGRITY=false -p 8080:8080 --read-only --tmpfs /tmp:exec -v blaze-data:/app/data blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs
	run: docker logs blaze

	- name: Test Chaining
	run: .github/scripts/chaining-without-referential-integrity.sh

	# Test that a transaction can create a transaction bundle with references that will be taken "as-is" and not tried to
	# resolve to existing resources
	bundle-with-references-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Install Blazectl
	run: .github/scripts/install-blazectl.sh

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -p 8080:8080 --read-only --tmpfs /tmp:exec -v blaze-data:/app/data blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs
	run: docker logs blaze

	- name: Load Data
	run: blazectl --no-progress --server http://localhost:8080/fhir upload .github/test-data/bundle-with-references

	jepsen-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Setup Java
	uses: actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b # v4
	with:
	distribution: 'temurin'
	java-version: '21'

	- name: Setup Clojure
	uses: DeLaGuardo/setup-clojure@94d767dbb80ae5c637d0f1ad70b75fa2b00495cd # 13.0
	with:
	cli: '1.12.0.1479'

	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Cache Local Maven Repo
	uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a # v4
	with:
	path: ~/.m2/repository
	key: ${{ runner.os }}-temurin-21-maven-jepsen-${{ hashFiles('modules/jepsen/deps.edn') }}

	- name: APT Update
	run: sudo apt-get update

	- name: Install Gnuplot
	run: sudo apt-get install gnuplot

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -e ENABLE_INTERACTION_DELETE_HISTORY=true -p 8080:8080 --read-only --tmpfs /tmp:exec -v blaze-data:/app/data blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs
	run: docker logs blaze

	- name: Check Capability Statement
	run: .github/scripts/check-capability-statement.sh

	- name: Jepsen Register Test
	run: make -C modules/jepsen register-test-fast

	- name: Jepsen Resource History Test
	run: make -C modules/jepsen resource-history-test-fast

	openid-auth-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Keycloak
	run: docker compose -f .github/openid-auth-test/docker-compose.yml up -d keycloak

	- name: Wait for Keycloak
	run: .github/scripts/wait-for-url.sh http://localhost:8090/health/ready

	- name: Run Blaze
	run: docker compose -f .github/openid-auth-test/docker-compose.yml up -d blaze

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs Keycloak
	run: docker compose -f .github/openid-auth-test/docker-compose.yml logs keycloak

	- name: Docker Logs Blaze
	run: docker compose -f .github/openid-auth-test/docker-compose.yml logs blaze

	- name: Unauthenticated Request
	run: test "MSG_AUTH_REQUIRED" = "$(curl -s http://localhost:8080/fhir \| jq -r .issue[0].details.coding[0].code)"

	- name: Authenticated Request
	run: .github/scripts/authenticated-request.sh

	custom-search-parameters-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Keycloak and Blaze
	run: docker compose -f .github/custom-search-parameters-test/docker-compose.yml up -d

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs Blaze
	run: docker compose -f .github/custom-search-parameters-test/docker-compose.yml logs blaze

	- name: Create Patient
	run: .github/custom-search-parameters-test/create-patient.sh

	- name: Search Patient
	run: .github/custom-search-parameters-test/search-patient.sh

	doc-copy-data-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Install Blazectl
	run: .github/scripts/install-blazectl.sh

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Test Setup
	run: docker compose -f docs/data-sync/copy/docker-compose.yml -f .github/doc-copy-data-test/docker-compose.override.yml up -d

	- name: Wait for Source Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Load Data Into Source Blaze
	run: blazectl --no-progress --server http://localhost:8080/fhir upload .github/test-data/synthea

	- name: Wait for Destination Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8082/health

	- name: Copy All Resources from Source to Destination
	run: scripts/copy-data.sh http://localhost:8080/fhir http://localhost:8082/fhir

	- name: Download Source Patients
	run: blazectl download --server http://localhost:8080/fhir Patient \| jq -c 'del(.meta.versionId) \| del(.meta.lastUpdated)' > src-patients.ndjson

	- name: Download Destination Patients
	run: blazectl download --server http://localhost:8082/fhir Patient \| jq -c 'del(.meta.versionId) \| del(.meta.lastUpdated)' > dst-patients.ndjson

	- name: Compare Source and Destination Patients
	run: diff src-patients.ndjson dst-patients.ndjson

	big-binary-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -e DB_RESOURCE_CACHE_SIZE=0 -p 8080:8080 --read-only --tmpfs /tmp:exec -v blaze-data:/app/data blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs
	run: docker logs blaze

	- name: Generate Large Binary Resources (JSON and XML)
	run: .github/scripts/generate-large-binary-resource.sh

	- name: Post Large Binary JSON Resource
	run: curl -f -H Content-Type:application/fhir+json -H Prefer:return=minimal -d @large-binary.json http://localhost:8080/fhir/Binary

	- name: Post Large Binary XML Resource
	run: curl -f -H Content-Type:application/fhir+xml -H Prefer:return=minimal -d @large-binary.xml http://localhost:8080/fhir/Binary

	- name: Download Both Resources
	run: test "2" = "$(curl -s http://localhost:8080/fhir/Binary \| jq .total)"

	frontend-test:
	needs: [ build, build-frontend ]
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Setup Node
	uses: actions/setup-node@39370e3970a6d050c480ffad4ff0ed4d3fdee5af # v4
	with:
	node-version: 21

	- name: Install Blazectl
	run: .github/scripts/install-blazectl.sh

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Download Blaze Frontend Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-frontend-image
	path: /tmp

	- name: Load Blaze Frontend Image
	run: docker load --input /tmp/blaze-frontend.tar

	# https://bugs.webkit.org/show_bug.cgi?id=160504
	- name: Add Blaze Localhost Entry needed for Webkit
	run: \|
	sudo echo "127.0.0.1 blaze.localhost" \| sudo tee -a /etc/hosts
	sudo echo "127.0.0.1 keycloak.localhost" \| sudo tee -a /etc/hosts

	- name: Generate Ingress Certificates
	run: make build-ingress

	- name: Run Keycloak
	run: docker compose -f modules/frontend-e2e/docker-compose.yml up -d keycloak

	- name: Sleep 20 Seconds
	run: sleep 20

	- name: Run Everything Else
	run: docker compose -f modules/frontend-e2e/docker-compose.yml up -d

	- name: Sleep 30 Seconds
	run: sleep 30

	- name: Docker Logs
	run: docker compose -f modules/frontend-e2e/docker-compose.yml logs

	- name: Load Data
	run: modules/frontend-e2e/upload.sh

	- name: Check Frontend
	run: .github/scripts/check-frontend.sh

	- name: Check Column Family resource-as-of-index
	run: .github/scripts/admin-api/column-family-metadata.sh resource-as-of-index

	- name: Check Column Family search-param-value-index
	run: .github/scripts/admin-api/column-family-metadata.sh search-param-value-index

	- name: Download Patient Resources
	run: modules/frontend-e2e/download-patient-resources.sh

	- name: Install Playwright
	run: make -C modules/frontend-e2e install

	- name: Run Playwright Tests
	run: make -C modules/frontend-e2e test

	- uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4
	with:
	name: playwright-report
	path: modules/frontend-e2e/playwright-report/

	missing-resource-content-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Create a Data Dir
	run: mkdir data

	- name: Run Blaze
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -p 8080:8080 --read-only --tmpfs /tmp:exec -v "$(pwd)/data:/app/data" blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Docker Logs
	run: docker logs blaze

	- name: Create Patient
	run: .github/scripts/create-patient-0.sh

	- name: Stop Blaze
	run: docker stop blaze

	- name: Remove Resource Database
	run: rm -r data/resource

	- name: Start Blaze Again
	run: docker start blaze

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	# TODO: Reactivate if we have an idea how to handle the missing DocumentReference
	# of the page ID cipher at startup.
	#- name: Fetch Patient Expecting an Error
	# run: .github/scripts/fetch-resource-0-with-missing-resource-content.sh

	# This test ensures that older versions of Blaze will migrate successfully to
	# the new database schema especially building the PatientLastChange index.
	build-patient-last-change-index-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Install Blazectl
	run: .github/scripts/install-blazectl.sh

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Blaze in the Version 0.27 before Introduction of the PatientLastChange Index
	run: docker run --name blaze --rm -d -e JAVA_TOOL_OPTIONS=-Xmx2g -e ENABLE_ADMIN_API=true -p 8080:8080 -v blaze-data:/app/data samply/blaze:0.27

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Load Data
	run: blazectl --no-progress --server http://localhost:8080/fhir upload .github/test-data/synthea

	- name: Ensure that the PatientLastChange Index does not exist
	run: .github/scripts/check-patient-last-change-index-missing.sh

	- name: Shut down Blaze
	run: docker stop blaze

	- name: Run Latest Blaze with the PatientLastChange Index
	run: docker run --name blaze -d -e JAVA_TOOL_OPTIONS=-Xmx2g -e ENABLE_ADMIN_API=true -e LOG_LEVEL=debug -p 8080:8080 -v blaze-data:/app/data blaze:latest

	- name: Wait for Blaze
	run: .github/scripts/wait-for-url.sh http://localhost:8080/health

	- name: Ensure that the State of PatientLastChange Index is Current
	run: .github/scripts/check-patient-last-change-index-state.sh current

	jepsen-distributed-test:
	needs: build
	runs-on: ubuntu-24.04

	steps:
	- name: Setup Java
	uses: actions/setup-java@8df1039502a15bceb9433410b1a100fbe190c53b # v4
	with:
	distribution: 'temurin'
	java-version: '21'

	- name: Setup Clojure
	uses: DeLaGuardo/setup-clojure@94d767dbb80ae5c637d0f1ad70b75fa2b00495cd # 13.0
	with:
	cli: '1.12.0.1479'

	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Cache Local Maven Repo
	uses: actions/cache@6849a6489940f00c2f30c0fb92c6274307ccb58a # v4
	with:
	path: ~/.m2/repository
	key: ${{ runner.os }}-temurin-21-maven-jepsen-${{ hashFiles('modules/jepsen/deps.edn') }}

	- name: APT Update
	run: sudo apt-get update

	- name: Install Gnuplot
	run: sudo apt-get install gnuplot

	- name: Download Blaze Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-image
	path: /tmp

	- name: Load Blaze Image
	run: docker load --input /tmp/blaze.tar

	- name: Run Kafka, Cassandra and Blaze
	run: docker compose -f .github/distributed-test/docker-compose.yml up -d

	- name: Wait for Blaze 1
	run: .github/scripts/wait-for-url.sh http://localhost:8081/metrics

	- name: Wait for Blaze 2
	run: .github/scripts/wait-for-url.sh http://localhost:8082/metrics

	- name: Docker Logs Kafka
	run: docker compose -f .github/distributed-test/docker-compose.yml logs kafka

	- name: Docker Logs Cassandra 1
	run: docker compose -f .github/distributed-test/docker-compose.yml logs cassandra-1

	- name: Docker Logs Cassandra 2
	run: docker compose -f .github/distributed-test/docker-compose.yml logs cassandra-2

	- name: Docker Logs Blaze 1
	run: docker compose -f .github/distributed-test/docker-compose.yml logs blaze-1

	- name: Docker Logs Blaze 2
	run: docker compose -f .github/distributed-test/docker-compose.yml logs blaze-2

	- name: Docker Stats
	run: docker stats --no-stream

	- name: Check Capability Statement
	run: .github/scripts/check-capability-statement.sh

	- name: Jepsen Register Test
	run: make -C modules/jepsen register-test-slow

	- name: Jepsen Resource History Test
	run: make -C modules/jepsen resource-history-test-slow

	- name: Docker Stats
	run: docker stats --no-stream

	# This job exists only as status check target for the branch protection
	# because we can't use push-image as this isn't executed in forks.
	pre-push-image:
	needs:
	- fmt
	- lint
	- test
	- test-root
	- image-scan
	- cql-expr-cache-test
	- integration-test
	- integration-test-synthea-1000
	- integration-test-patient-purge
	- not-enforcing-referential-integrity-test
	- admin-api-test
	- small-transactions-test
	- big-transaction-test
	- evaluate-measure-timeout-test
	- include-without-referential-integrity-test
	- chaining-without-referential-integrity-test
	- bundle-with-references-test
	- jepsen-test
	- jepsen-distributed-test
	- openid-auth-test
	- doc-copy-data-test
	- big-binary-test
	- frontend-test
	- missing-resource-content-test
	- custom-search-parameters-test
	- build-patient-last-change-index-test
	runs-on: ubuntu-24.04

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	push-image:
	if: github.event_name != 'pull_request' \|\| (github.event.pull_request.base.repo.full_name == github.event.pull_request.head.repo.full_name)
	needs:
	- pre-push-image
	runs-on: ubuntu-24.04
	permissions:
	packages: write
	strategy:
	matrix:
	image:
	- name: ${{ github.event.repository.name }}
	context: .
	- name: ${{ github.event.repository.name }}-frontend
	context: modules/frontend
	env:
	dockerhub_username: ${{ secrets.DOCKERHUB_USERNAME }}

	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Download Blaze Uberjar
	if: ${{ matrix.image.context == '.' }}
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: blaze-uberjar
	path: target

	- name: Setup Node
	if: ${{ matrix.image.context == 'modules/frontend' }}
	uses: actions/setup-node@39370e3970a6d050c480ffad4ff0ed4d3fdee5af # v4
	with:
	node-version: 21

	- name: Build Frontend
	if: ${{ matrix.image.context == 'modules/frontend' }}
	run: make build-frontend

	- name: Download Image
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4
	with:
	name: ${{ matrix.image.name }}-image
	path: /tmp

	- name: Load Image
	run: docker load --input /tmp/${{ matrix.image.name }}.tar

	- name: Set up QEMU
	uses: docker/setup-qemu-action@49b3bc8e6bdd4a60e6116a5414239cba5943d3cf # v3

	- name: Set up Docker Buildx
	uses: docker/setup-buildx-action@c47758b77c9736f4b2ef4073d4d51994fabfe349 # v3

	- name: Login to GHCR
	uses: docker/login-action@9780b0c442fbb1117ed29e0efdff1e18412f7567 # v3
	with:
	registry: ghcr.io
	username: ${{ github.repository_owner }}
	password: ${{ secrets.GITHUB_TOKEN }}

	- name: GHCR meta
	id: ghcr-meta
	uses: docker/metadata-action@369eb591f429131d6889c46b94e711f089e6ca96 # v5
	with:
	images: \|
	ghcr.io/${{ github.repository_owner }}/${{ matrix.image.name }}
	tags: \|
	type=schedule
	type=ref,event=branch
	type=ref,event=pr
	type=semver,pattern={{version}}
	type=semver,pattern={{major}}.{{minor}}

	- name: Build and push to GHCR
	uses: docker/build-push-action@4f58ea79222b3b9dc2c8bbdd6debcef730109a75 # v6
	with:
	context: ${{ matrix.image.context }}
	platforms: linux/amd64,linux/arm64
	push: true
	tags: ${{ steps.ghcr-meta.outputs.tags }}
	labels: ${{ steps.ghcr-meta.outputs.labels }}

	- name: Login to DockerHub
	if: ${{ env.dockerhub_username != '' }}
	uses: docker/login-action@9780b0c442fbb1117ed29e0efdff1e18412f7567 # v3
	with:
	username: ${{ secrets.DOCKERHUB_USERNAME }}
	password: ${{ secrets.DOCKERHUB_TOKEN }}

	- name: DockerHub meta
	if: ${{ env.dockerhub_username != '' }}
	id: dockerhub-meta
	uses: docker/metadata-action@369eb591f429131d6889c46b94e711f089e6ca96 # v5
	with:
	images: \|
	${{ github.repository_owner }}/${{ matrix.image.name }}
	tags: \|
	type=schedule
	type=ref,event=branch
	type=ref,event=pr
	type=semver,pattern={{version}}
	type=semver,pattern={{major}}.{{minor}}

	- name: Build and push to DockerHub
	if: ${{ env.dockerhub_username != '' }}
	uses: docker/build-push-action@4f58ea79222b3b9dc2c8bbdd6debcef730109a75 # v6
	with:
	context: ${{ matrix.image.context }}
	platforms: linux/amd64,linux/arm64
	push: true
	tags: ${{ steps.dockerhub-meta.outputs.tags }}
	labels: ${{ steps.dockerhub-meta.outputs.labels }}

	release:
	if: github.ref_type == 'tag'
	needs:
	- push-image
	runs-on: ubuntu-24.04
	permissions:
	contents: write

	steps:
	- name: Release
	uses: softprops/action-gh-release@e7a8f85e1c67a31e6ed99a94b41bd0b71bbee6b8 # v2
	with:
	files: target/blaze-*-standalone.jar

	build-pages:
	runs-on: ubuntu-24.04
	steps:
	- name: Check out Git repository
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4

	- name: Setup Node
	uses: actions/setup-node@39370e3970a6d050c480ffad4ff0ed4d3fdee5af # v4
	with:
	node-version: 21
	cache: npm
	cache-dependency-path: 'docs/package-lock.json'

	- name: Build
	working-directory: docs
	env:
	DOCS_BASE: "/${{ github.event.repository.name }}/"
	run: make build

	- name: Setup Pages
	uses: actions/configure-pages@983d7736d9b0ae728b81ab479565c72886d7745b # v5

	- name: Upload artifact
	uses: actions/upload-pages-artifact@56afc609e74202658d3ffba0e8f6dda462b719fa # v3
	with:
	path: docs/.vitepress/dist

	deploy-pages:
	if: github.ref == 'refs/heads/main'
	runs-on: ubuntu-24.04
	needs: [ build-pages ]
	permissions:
	pages: write
	id-token: write
	environment:
	name: github-pages
	url: ${{ steps.deployment.outputs.page_url }}
	steps:
	- name: Deploy to GitHub Pages
	id: deployment
	uses: actions/deploy-pages@d6db90164ac5ed86f2b6aed7e0febac5b3c0c03e # v4

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chore(deps): update codecov/codecov-action action to v5 #7450

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